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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-177292131-T-TG (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=177292131&ref=T&alt=TG&genome=hg38&allGenes=true"API Response
json
{
  "variants": [
    {
      "chr": "5",
      "pos": 177292131,
      "ref": "T",
      "alt": "TG",
      "effect": "frameshift_variant",
      "transcript": "ENST00000439151.7",
      "consequences": [
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs",
          "transcript": "NM_022455.5",
          "protein_id": "NP_071900.2",
          "transcript_support_level": null,
          "aa_start": 2146,
          "aa_end": null,
          "aa_length": 2696,
          "cds_start": 6438,
          "cds_end": null,
          "cds_length": 8091,
          "cdna_start": 6635,
          "cdna_end": null,
          "cdna_length": 13042,
          "mane_select": "ENST00000439151.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs",
          "transcript": "ENST00000439151.7",
          "protein_id": "ENSP00000395929.2",
          "transcript_support_level": 1,
          "aa_start": 2146,
          "aa_end": null,
          "aa_length": 2696,
          "cds_start": 6438,
          "cds_end": null,
          "cds_length": 8091,
          "cdna_start": 6635,
          "cdna_end": null,
          "cdna_length": 13042,
          "mane_select": "NM_022455.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.5564dupG",
          "hgvs_p": "p.Cys1855fs",
          "transcript": "ENST00000347982.9",
          "protein_id": "ENSP00000343209.5",
          "transcript_support_level": 1,
          "aa_start": 1855,
          "aa_end": null,
          "aa_length": 2405,
          "cds_start": 5565,
          "cds_end": null,
          "cds_length": 7218,
          "cdna_start": 5732,
          "cdna_end": null,
          "cdna_length": 7688,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs",
          "transcript": "NM_001409301.1",
          "protein_id": "NP_001396230.1",
          "transcript_support_level": null,
          "aa_start": 2146,
          "aa_end": null,
          "aa_length": 2696,
          "cds_start": 6438,
          "cds_end": null,
          "cds_length": 8091,
          "cdna_start": 6592,
          "cdna_end": null,
          "cdna_length": 12999,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs",
          "transcript": "NM_001409302.1",
          "protein_id": "NP_001396231.1",
          "transcript_support_level": null,
          "aa_start": 2146,
          "aa_end": null,
          "aa_length": 2696,
          "cds_start": 6438,
          "cds_end": null,
          "cds_length": 8091,
          "cdna_start": 6595,
          "cdna_end": null,
          "cdna_length": 13002,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs",
          "transcript": "NM_001409303.1",
          "protein_id": "NP_001396232.1",
          "transcript_support_level": null,
          "aa_start": 2146,
          "aa_end": null,
          "aa_length": 2696,
          "cds_start": 6438,
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          "cdna_start": 6490,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 19,
          "exon_rank_end": null,
          "exon_count": 20,
          "intron_rank": null,
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          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6128dupG",
          "hgvs_p": "p.Cys2043fs",
          "transcript": "ENST00000687453.1",
          "protein_id": "ENSP00000508426.1",
          "transcript_support_level": null,
          "aa_start": 2043,
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          "aa_length": 2593,
          "cds_start": 6129,
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          "cdna_start": 6147,
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          "mane_select": null,
          "mane_plus": null,
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          "feature": null
        },
        {
          "aa_ref": "C",
          "aa_alt": "W?",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "frameshift_variant"
          ],
          "exon_rank": 23,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
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          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "c.6017dupG",
          "hgvs_p": "p.Cys2006fs",
          "transcript": "NM_001409304.1",
          "protein_id": "NP_001396233.1",
          "transcript_support_level": null,
          "aa_start": 2006,
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          "cds_start": 6018,
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          "cdna_start": 6172,
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        {
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          "hgvs_c": "c.5684dupG",
          "hgvs_p": "p.Cys1895fs",
          "transcript": "NM_001409305.1",
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        {
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          "transcript": "ENST00000508029.6",
          "protein_id": "ENSP00000425120.2",
          "transcript_support_level": 2,
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          "cds_start": 1080,
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          "cdna_start": 1539,
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
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          "exon_rank": 23,
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          "exon_count": 24,
          "intron_rank": null,
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          "gene_symbol": "NSD1",
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          "hgvs_c": "n.6020dupG",
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          "transcript": "ENST00000685206.1",
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          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_length": 7863,
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          "exon_rank": 1,
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          "exon_count": 2,
          "intron_rank": null,
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          "gene_symbol": "NSD1",
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          "hgvs_c": "n.853dupG",
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          "transcript": "ENST00000686385.1",
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          "transcript_support_level": null,
          "aa_start": null,
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          "cdna_start": null,
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          "cdna_length": 2809,
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        },
        {
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          "protein_coding": false,
          "strand": true,
          "consequences": [
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          "exon_rank": 22,
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          "exon_count": 23,
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          "gene_symbol": "NSD1",
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          "hgvs_c": "n.5834dupG",
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          "transcript": "ENST00000688613.1",
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          "cdna_length": 12180,
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        },
        {
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          "protein_coding": false,
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          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
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          "exon_count": 2,
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          "gene_symbol": "NSD1",
          "gene_hgnc_id": 14234,
          "hgvs_c": "n.*4_*5insG",
          "hgvs_p": null,
          "transcript": "ENST00000513736.1",
          "protein_id": null,
          "transcript_support_level": 5,
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          "aa_length": null,
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          "cdna_length": 574,
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        }
      ],
      "gene_symbol": "NSD1",
      "gene_hgnc_id": 14234,
      "dbsnp": "rs1554206836",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": null,
      "computational_prediction_selected": null,
      "computational_source_selected": null,
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": null,
      "bayesdelnoaf_prediction": null,
      "phylop100way_score": 9.999,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 18,
      "acmg_classification": "Pathogenic",
      "acmg_criteria": "PVS1,PM2,PP5_Very_Strong",
      "acmg_by_gene": [
        {
          "score": 18,
          "benign_score": 0,
          "pathogenic_score": 18,
          "criteria": [
            "PVS1",
            "PM2",
            "PP5_Very_Strong"
          ],
          "verdict": "Pathogenic",
          "transcript": "ENST00000439151.7",
          "gene_symbol": "NSD1",
          "hgnc_id": 14234,
          "effects": [
            "frameshift_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.6437dupG",
          "hgvs_p": "p.Cys2146fs"
        }
      ],
      "clinvar_disease": "Sotos syndrome,not provided",
      "clinvar_classification": "Pathogenic/Likely pathogenic",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "P:2 LP:1",
      "phenotype_combined": "Sotos syndrome|not provided",
      "pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
      "custom_annotations": null
    }
  ],
  "message": null
}