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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-181195622-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=181195622&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 181195622,
"ref": "A",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "NM_203293.3",
"consequences": [
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.1080T>C",
"hgvs_p": "p.Asp360Asp",
"transcript": "NM_203293.3",
"protein_id": "NP_976038.1",
"transcript_support_level": null,
"aa_start": 360,
"aa_end": null,
"aa_length": 511,
"cds_start": 1080,
"cds_end": null,
"cds_length": 1536,
"cdna_start": 1166,
"cdna_end": null,
"cdna_length": 2864,
"mane_select": "ENST00000274773.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_203293.3"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.1080T>C",
"hgvs_p": "p.Asp360Asp",
"transcript": "ENST00000274773.12",
"protein_id": "ENSP00000274773.7",
"transcript_support_level": 1,
"aa_start": 360,
"aa_end": null,
"aa_length": 511,
"cds_start": 1080,
"cds_end": null,
"cds_length": 1536,
"cdna_start": 1166,
"cdna_end": null,
"cdna_length": 2864,
"mane_select": "NM_203293.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000274773.12"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.534T>C",
"hgvs_p": "p.Asp178Asp",
"transcript": "ENST00000393319.7",
"protein_id": "ENSP00000376994.3",
"transcript_support_level": 1,
"aa_start": 178,
"aa_end": null,
"aa_length": 329,
"cds_start": 534,
"cds_end": null,
"cds_length": 990,
"cdna_start": 1311,
"cdna_end": null,
"cdna_length": 2320,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393319.7"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.456T>C",
"hgvs_p": "p.Asp152Asp",
"transcript": "ENST00000393315.5",
"protein_id": "ENSP00000376991.1",
"transcript_support_level": 1,
"aa_start": 152,
"aa_end": null,
"aa_length": 303,
"cds_start": 456,
"cds_end": null,
"cds_length": 912,
"cdna_start": 1154,
"cdna_end": null,
"cdna_length": 2851,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000393315.5"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.456T>C",
"hgvs_p": "p.Asp152Asp",
"transcript": "ENST00000422067.2",
"protein_id": "ENSP00000391458.2",
"transcript_support_level": 1,
"aa_start": 152,
"aa_end": null,
"aa_length": 303,
"cds_start": 456,
"cds_end": null,
"cds_length": 912,
"cdna_start": 945,
"cdna_end": null,
"cdna_length": 1954,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000422067.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.1107T>C",
"hgvs_p": "p.Asp369Asp",
"transcript": "ENST00000946601.1",
"protein_id": "ENSP00000616660.1",
"transcript_support_level": null,
"aa_start": 369,
"aa_end": null,
"aa_length": 520,
"cds_start": 1107,
"cds_end": null,
"cds_length": 1563,
"cdna_start": 1200,
"cdna_end": null,
"cdna_length": 2893,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000946601.1"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.534T>C",
"hgvs_p": "p.Asp178Asp",
"transcript": "NM_203297.2",
"protein_id": "NP_976042.1",
"transcript_support_level": null,
"aa_start": 178,
"aa_end": null,
"aa_length": 329,
"cds_start": 534,
"cds_end": null,
"cds_length": 990,
"cdna_start": 1311,
"cdna_end": null,
"cdna_length": 3009,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_203297.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.456T>C",
"hgvs_p": "p.Asp152Asp",
"transcript": "NM_203294.2",
"protein_id": "NP_976039.1",
"transcript_support_level": null,
"aa_start": 152,
"aa_end": null,
"aa_length": 303,
"cds_start": 456,
"cds_end": null,
"cds_length": 912,
"cdna_start": 877,
"cdna_end": null,
"cdna_length": 2575,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_203294.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.456T>C",
"hgvs_p": "p.Asp152Asp",
"transcript": "NM_203295.2",
"protein_id": "NP_976040.1",
"transcript_support_level": null,
"aa_start": 152,
"aa_end": null,
"aa_length": 303,
"cds_start": 456,
"cds_end": null,
"cds_length": 912,
"cdna_start": 945,
"cdna_end": null,
"cdna_length": 2643,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_203295.2"
},
{
"aa_ref": "D",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "c.456T>C",
"hgvs_p": "p.Asp152Asp",
"transcript": "NM_203296.2",
"protein_id": "NP_976041.1",
"transcript_support_level": null,
"aa_start": 152,
"aa_end": null,
"aa_length": 303,
"cds_start": 456,
"cds_end": null,
"cds_length": 912,
"cdna_start": 1154,
"cdna_end": null,
"cdna_length": 2852,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_203296.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"hgvs_c": "n.2665T>C",
"hgvs_p": null,
"transcript": "ENST00000504241.1",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4357,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000504241.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS1",
"gene_hgnc_id": 40764,
"hgvs_c": "n.127A>G",
"hgvs_p": null,
"transcript": "ENST00000512508.1",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 500,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000512508.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1516A>G",
"hgvs_p": null,
"transcript": "NR_183280.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2775,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183280.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1642A>G",
"hgvs_p": null,
"transcript": "NR_183281.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2901,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183281.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1692A>G",
"hgvs_p": null,
"transcript": "NR_183282.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2951,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183282.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1818A>G",
"hgvs_p": null,
"transcript": "NR_183283.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3077,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183283.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1766A>G",
"hgvs_p": null,
"transcript": "NR_183284.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3025,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183284.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.1640A>G",
"hgvs_p": null,
"transcript": "NR_183285.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2899,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_183285.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.168+4180A>G",
"hgvs_p": null,
"transcript": "ENST00000514784.2",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 802,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000514784.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TRIM7-AS2",
"gene_hgnc_id": 56031,
"hgvs_c": "n.216+4180A>G",
"hgvs_p": null,
"transcript": "ENST00000725220.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 746,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000725220.1"
}
],
"gene_symbol": "TRIM7",
"gene_hgnc_id": 16278,
"dbsnp": "rs1271757829",
"frequency_reference_population": 7.1074015e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 7.1074e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5899999737739563,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.59,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.221,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -3,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP7",
"acmg_by_gene": [
{
"score": -3,
"benign_score": 5,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "NM_203293.3",
"gene_symbol": "TRIM7",
"hgnc_id": 16278,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1080T>C",
"hgvs_p": "p.Asp360Asp"
},
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "ENST00000512508.1",
"gene_symbol": "TRIM7-AS1",
"hgnc_id": 40764,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.127A>G",
"hgvs_p": null
},
{
"score": -2,
"benign_score": 4,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong"
],
"verdict": "Likely_benign",
"transcript": "NR_183280.1",
"gene_symbol": "TRIM7-AS2",
"hgnc_id": 56031,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.1516A>G",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}