← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-236596-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=236596&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 236596,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_004168.4",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "NM_004168.4",
"protein_id": "NP_004159.2",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 664,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1995,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000264932.11",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_004168.4"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000264932.11",
"protein_id": "ENSP00000264932.6",
"transcript_support_level": 1,
"aa_start": 477,
"aa_end": null,
"aa_length": 664,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1995,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_004168.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000264932.11"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000286001",
"gene_hgnc_id": null,
"hgvs_c": "n.*162C>T",
"hgvs_p": null,
"transcript": "ENST00000651543.1",
"protein_id": "ENSP00000499215.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000651543.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000286001",
"gene_hgnc_id": null,
"hgvs_c": "n.*162C>T",
"hgvs_p": null,
"transcript": "ENST00000651543.1",
"protein_id": "ENSP00000499215.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000651543.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000874235.1",
"protein_id": "ENSP00000544294.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 726,
"cds_start": 1429,
"cds_end": null,
"cds_length": 2181,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874235.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1582C>T",
"hgvs_p": "p.Pro528Ser",
"transcript": "ENST00000952715.1",
"protein_id": "ENSP00000622774.1",
"transcript_support_level": null,
"aa_start": 528,
"aa_end": null,
"aa_length": 715,
"cds_start": 1582,
"cds_end": null,
"cds_length": 2148,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952715.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1483C>T",
"hgvs_p": "p.Pro495Ser",
"transcript": "ENST00000874242.1",
"protein_id": "ENSP00000544301.1",
"transcript_support_level": null,
"aa_start": 495,
"aa_end": null,
"aa_length": 682,
"cds_start": 1483,
"cds_end": null,
"cds_length": 2049,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874242.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000952713.1",
"protein_id": "ENSP00000622772.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 681,
"cds_start": 1429,
"cds_end": null,
"cds_length": 2046,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952713.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1456C>T",
"hgvs_p": "p.Pro486Ser",
"transcript": "ENST00000952712.1",
"protein_id": "ENSP00000622771.1",
"transcript_support_level": null,
"aa_start": 486,
"aa_end": null,
"aa_length": 673,
"cds_start": 1456,
"cds_end": null,
"cds_length": 2022,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952712.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000874248.1",
"protein_id": "ENSP00000544307.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 672,
"cds_start": 1429,
"cds_end": null,
"cds_length": 2019,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874248.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1435C>T",
"hgvs_p": "p.Pro479Ser",
"transcript": "ENST00000952708.1",
"protein_id": "ENSP00000622767.1",
"transcript_support_level": null,
"aa_start": 479,
"aa_end": null,
"aa_length": 666,
"cds_start": 1435,
"cds_end": null,
"cds_length": 2001,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952708.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000874234.1",
"protein_id": "ENSP00000544293.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 663,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1992,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874234.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1426C>T",
"hgvs_p": "p.Pro476Ser",
"transcript": "ENST00000952707.1",
"protein_id": "ENSP00000622766.1",
"transcript_support_level": null,
"aa_start": 476,
"aa_end": null,
"aa_length": 663,
"cds_start": 1426,
"cds_end": null,
"cds_length": 1992,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952707.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1405C>T",
"hgvs_p": "p.Pro469Ser",
"transcript": "ENST00000874246.1",
"protein_id": "ENSP00000544305.1",
"transcript_support_level": null,
"aa_start": 469,
"aa_end": null,
"aa_length": 656,
"cds_start": 1405,
"cds_end": null,
"cds_length": 1971,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874246.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1396C>T",
"hgvs_p": "p.Pro466Ser",
"transcript": "ENST00000874244.1",
"protein_id": "ENSP00000544303.1",
"transcript_support_level": null,
"aa_start": 466,
"aa_end": null,
"aa_length": 653,
"cds_start": 1396,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874244.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1396C>T",
"hgvs_p": "p.Pro466Ser",
"transcript": "ENST00000952709.1",
"protein_id": "ENSP00000622768.1",
"transcript_support_level": null,
"aa_start": 466,
"aa_end": null,
"aa_length": 653,
"cds_start": 1396,
"cds_end": null,
"cds_length": 1962,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952709.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1384C>T",
"hgvs_p": "p.Pro462Ser",
"transcript": "ENST00000952716.1",
"protein_id": "ENSP00000622775.1",
"transcript_support_level": null,
"aa_start": 462,
"aa_end": null,
"aa_length": 649,
"cds_start": 1384,
"cds_end": null,
"cds_length": 1950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952716.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1378C>T",
"hgvs_p": "p.Pro460Ser",
"transcript": "ENST00000952711.1",
"protein_id": "ENSP00000622770.1",
"transcript_support_level": null,
"aa_start": 460,
"aa_end": null,
"aa_length": 647,
"cds_start": 1378,
"cds_end": null,
"cds_length": 1944,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952711.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000874236.1",
"protein_id": "ENSP00000544295.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 626,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1881,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874236.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1285C>T",
"hgvs_p": "p.Pro429Ser",
"transcript": "NM_001294332.2",
"protein_id": "NP_001281261.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 616,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1851,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001294332.2"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1285C>T",
"hgvs_p": "p.Pro429Ser",
"transcript": "ENST00000510361.5",
"protein_id": "ENSP00000427703.1",
"transcript_support_level": 2,
"aa_start": 429,
"aa_end": null,
"aa_length": 616,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1851,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000510361.5"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1264C>T",
"hgvs_p": "p.Pro422Ser",
"transcript": "ENST00000874233.1",
"protein_id": "ENSP00000544292.1",
"transcript_support_level": null,
"aa_start": 422,
"aa_end": null,
"aa_length": 609,
"cds_start": 1264,
"cds_end": null,
"cds_length": 1830,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874233.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1258C>T",
"hgvs_p": "p.Pro420Ser",
"transcript": "ENST00000874240.1",
"protein_id": "ENSP00000544299.1",
"transcript_support_level": null,
"aa_start": 420,
"aa_end": null,
"aa_length": 607,
"cds_start": 1258,
"cds_end": null,
"cds_length": 1824,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874240.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "NM_001330758.2",
"protein_id": "NP_001317687.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 583,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1752,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001330758.2"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000504309.5",
"protein_id": "ENSP00000426514.1",
"transcript_support_level": 5,
"aa_start": 477,
"aa_end": null,
"aa_length": 583,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1752,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000504309.5"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1180C>T",
"hgvs_p": "p.Pro394Ser",
"transcript": "ENST00000874239.1",
"protein_id": "ENSP00000544298.1",
"transcript_support_level": null,
"aa_start": 394,
"aa_end": null,
"aa_length": 581,
"cds_start": 1180,
"cds_end": null,
"cds_length": 1746,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874239.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1120C>T",
"hgvs_p": "p.Pro374Ser",
"transcript": "ENST00000874245.1",
"protein_id": "ENSP00000544304.1",
"transcript_support_level": null,
"aa_start": 374,
"aa_end": null,
"aa_length": 561,
"cds_start": 1120,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874245.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "ENST00000874243.1",
"protein_id": "ENSP00000544302.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 545,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1638,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874243.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1285C>T",
"hgvs_p": "p.Pro429Ser",
"transcript": "ENST00000874241.1",
"protein_id": "ENSP00000544300.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 535,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1608,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874241.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1036C>T",
"hgvs_p": "p.Pro346Ser",
"transcript": "ENST00000874237.1",
"protein_id": "ENSP00000544296.1",
"transcript_support_level": null,
"aa_start": 346,
"aa_end": null,
"aa_length": 533,
"cds_start": 1036,
"cds_end": null,
"cds_length": 1602,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874237.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.958C>T",
"hgvs_p": "p.Pro320Ser",
"transcript": "ENST00000952710.1",
"protein_id": "ENSP00000622769.1",
"transcript_support_level": null,
"aa_start": 320,
"aa_end": null,
"aa_length": 507,
"cds_start": 958,
"cds_end": null,
"cds_length": 1524,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952710.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1180C>T",
"hgvs_p": "p.Pro394Ser",
"transcript": "ENST00000925263.1",
"protein_id": "ENSP00000595322.1",
"transcript_support_level": null,
"aa_start": 394,
"aa_end": null,
"aa_length": 500,
"cds_start": 1180,
"cds_end": null,
"cds_length": 1503,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000925263.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.871C>T",
"hgvs_p": "p.Pro291Ser",
"transcript": "ENST00000874238.1",
"protein_id": "ENSP00000544297.1",
"transcript_support_level": null,
"aa_start": 291,
"aa_end": null,
"aa_length": 478,
"cds_start": 871,
"cds_end": null,
"cds_length": 1437,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874238.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.481C>T",
"hgvs_p": "p.Pro161Ser",
"transcript": "ENST00000952714.1",
"protein_id": "ENSP00000622773.1",
"transcript_support_level": null,
"aa_start": 161,
"aa_end": null,
"aa_length": 348,
"cds_start": 481,
"cds_end": null,
"cds_length": 1047,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952714.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.82C>T",
"hgvs_p": "p.Pro28Ser",
"transcript": "ENST00000515815.5",
"protein_id": "ENSP00000422404.1",
"transcript_support_level": 3,
"aa_start": 28,
"aa_end": null,
"aa_length": 125,
"cds_start": 82,
"cds_end": null,
"cds_length": 378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000515815.5"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "XM_011514072.3",
"protein_id": "XP_011512374.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 680,
"cds_start": 1429,
"cds_end": null,
"cds_length": 2043,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011514072.3"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1285C>T",
"hgvs_p": "p.Pro429Ser",
"transcript": "XM_047417467.1",
"protein_id": "XP_047273423.1",
"transcript_support_level": null,
"aa_start": 429,
"aa_end": null,
"aa_length": 632,
"cds_start": 1285,
"cds_end": null,
"cds_length": 1899,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047417467.1"
},
{
"aa_ref": "P",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser",
"transcript": "XM_011514073.3",
"protein_id": "XP_011512375.1",
"transcript_support_level": null,
"aa_start": 477,
"aa_end": null,
"aa_length": 599,
"cds_start": 1429,
"cds_end": null,
"cds_length": 1800,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011514073.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "c.896-3762C>T",
"hgvs_p": null,
"transcript": "ENST00000874247.1",
"protein_id": "ENSP00000544306.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 485,
"cds_start": null,
"cds_end": null,
"cds_length": 1458,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874247.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.1469C>T",
"hgvs_p": null,
"transcript": "ENST00000505555.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000505555.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.2176C>T",
"hgvs_p": null,
"transcript": "ENST00000511810.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000511810.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.1384C>T",
"hgvs_p": null,
"transcript": "ENST00000514027.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000514027.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.1015C>T",
"hgvs_p": null,
"transcript": "ENST00000515752.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000515752.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.1465C>T",
"hgvs_p": null,
"transcript": "XR_007058614.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_007058614.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"hgvs_c": "n.*80C>T",
"hgvs_p": null,
"transcript": "ENST00000512962.5",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000512962.5"
}
],
"gene_symbol": "SDHA",
"gene_hgnc_id": 10680,
"dbsnp": "rs770506764",
"frequency_reference_population": 0.000014368878,
"hom_count_reference_population": 0,
"allele_count_reference_population": 21,
"gnomad_exomes_af": 0.0000143689,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 21,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.6144098043441772,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.25999999046325684,
"splice_prediction_selected": "Uncertain_significance",
"splice_source_selected": "max_spliceai",
"revel_score": 0.369,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.5591,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.05,
"bayesdelnoaf_prediction": "Uncertain_significance",
"phylop100way_score": 7.585,
"phylop100way_prediction": "Pathogenic",
"spliceai_max_score": 0.26,
"spliceai_max_prediction": "Uncertain_significance",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 0,
"pathogenic_score": 0,
"criteria": [],
"verdict": "Uncertain_significance",
"transcript": "NM_004168.4",
"gene_symbol": "SDHA",
"hgnc_id": 10680,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.1429C>T",
"hgvs_p": "p.Pro477Ser"
},
{
"score": 2,
"benign_score": 0,
"pathogenic_score": 2,
"criteria": [
"PM2"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000651543.1",
"gene_symbol": "ENSG00000286001",
"hgnc_id": null,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.*162C>T",
"hgvs_p": null
}
],
"clinvar_disease": " nuclear type 1,Dilated cardiomyopathy 1GG,Hereditary cancer-predisposing syndrome,Mitochondrial complex II deficiency,Neurodegeneration with ataxia and late-onset optic atrophy,Pheochromocytoma/paraganglioma syndrome 5,not provided",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "US:6",
"phenotype_combined": "Pheochromocytoma/paraganglioma syndrome 5;Mitochondrial complex II deficiency, nuclear type 1|not provided|Hereditary cancer-predisposing syndrome|Dilated cardiomyopathy 1GG;Neurodegeneration with ataxia and late-onset optic atrophy;Pheochromocytoma/paraganglioma syndrome 5;Mitochondrial complex II deficiency, nuclear type 1|Dilated cardiomyopathy 1GG",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}