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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-79642871-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=79642871&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 79642871,
      "ref": "A",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "NM_001349549.2",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "NM_001114394.3",
          "protein_id": "NP_001107866.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": 1384,
          "cdna_end": null,
          "cdna_length": 5100,
          "mane_select": "ENST00000453514.6",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001114394.3"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000453514.6",
          "protein_id": "ENSP00000397563.1",
          "transcript_support_level": 5,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 484,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1455,
          "cdna_start": 1384,
          "cdna_end": null,
          "cdna_length": 5100,
          "mane_select": "NM_001114394.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000453514.6"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "ENST00000423041.6",
          "protein_id": "ENSP00000393412.2",
          "transcript_support_level": 1,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 480,
          "cds_start": 700,
          "cds_end": null,
          "cds_length": 1443,
          "cdna_start": 1105,
          "cdna_end": null,
          "cdna_length": 3223,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000423041.6"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000504233.5",
          "protein_id": "ENSP00000421966.1",
          "transcript_support_level": 1,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 441,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1326,
          "cdna_start": 1390,
          "cdna_end": null,
          "cdna_length": 2997,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000504233.5"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000947497.1",
          "protein_id": "ENSP00000617556.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 531,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1596,
          "cdna_start": 1384,
          "cdna_end": null,
          "cdna_length": 5239,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000947497.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "ENST00000947503.1",
          "protein_id": "ENSP00000617562.1",
          "transcript_support_level": null,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 527,
          "cds_start": 700,
          "cds_end": null,
          "cds_length": 1584,
          "cdna_start": 1076,
          "cdna_end": null,
          "cdna_length": 3325,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000947503.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.742A>C",
          "hgvs_p": "p.Ile248Leu",
          "transcript": "ENST00000923579.1",
          "protein_id": "ENSP00000593638.1",
          "transcript_support_level": null,
          "aa_start": 248,
          "aa_end": null,
          "aa_length": 519,
          "cds_start": 742,
          "cds_end": null,
          "cds_length": 1560,
          "cdna_start": 1254,
          "cdna_end": null,
          "cdna_length": 3084,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000923579.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.730A>C",
          "hgvs_p": "p.Ile244Leu",
          "transcript": "ENST00000947500.1",
          "protein_id": "ENSP00000617559.1",
          "transcript_support_level": null,
          "aa_start": 244,
          "aa_end": null,
          "aa_length": 515,
          "cds_start": 730,
          "cds_end": null,
          "cds_length": 1548,
          "cdna_start": 1392,
          "cdna_end": null,
          "cdna_length": 3580,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000947500.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "NM_001349549.2",
          "protein_id": "NP_001336478.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": 1384,
          "cdna_end": null,
          "cdna_length": 5175,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349549.2"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "NM_001349550.2",
          "protein_id": "NP_001336479.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": 1179,
          "cdna_end": null,
          "cdna_length": 4970,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001349550.2"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "NM_001388093.1",
          "protein_id": "NP_001375022.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": 1143,
          "cdna_end": null,
          "cdna_length": 4934,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388093.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "NM_001388094.1",
          "protein_id": "NP_001375023.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": 1065,
          "cdna_end": null,
          "cdna_length": 4856,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388094.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000885999.1",
          "protein_id": "ENSP00000556058.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1530,
          "cdna_start": 1404,
          "cdna_end": null,
          "cdna_length": 3597,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000885999.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000886008.1",
          "protein_id": "ENSP00000556067.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 509,
          "cds_start": 712,
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          "cds_length": 1530,
          "cdna_start": 1444,
          "cdna_end": null,
          "cdna_length": 3631,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "ENST00000886008.1"
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.709A>C",
          "hgvs_p": "p.Ile237Leu",
          "transcript": "ENST00000886014.1",
          "protein_id": "ENSP00000556073.1",
          "transcript_support_level": null,
          "aa_start": 237,
          "aa_end": null,
          "aa_length": 508,
          "cds_start": 709,
          "cds_end": null,
          "cds_length": 1527,
          "cdna_start": 1371,
          "cdna_end": null,
          "cdna_length": 3195,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886014.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu",
          "transcript": "ENST00000886003.1",
          "protein_id": "ENSP00000556062.1",
          "transcript_support_level": null,
          "aa_start": 238,
          "aa_end": null,
          "aa_length": 506,
          "cds_start": 712,
          "cds_end": null,
          "cds_length": 1521,
          "cdna_start": 1384,
          "cdna_end": null,
          "cdna_length": 3563,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000886003.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 7,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "NM_001349551.2",
          "protein_id": "NP_001336480.1",
          "transcript_support_level": null,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 700,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1372,
          "cdna_end": null,
          "cdna_length": 5163,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "NM_001349551.2"
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "NM_001388095.1",
          "protein_id": "NP_001375024.1",
          "transcript_support_level": null,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 700,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1509,
          "cdna_end": null,
          "cdna_length": 5300,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388095.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "NM_001388096.1",
          "protein_id": "NP_001375025.1",
          "transcript_support_level": null,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 700,
          "cds_end": null,
          "cds_length": 1518,
          "cdna_start": 1127,
          "cdna_end": null,
          "cdna_length": 4918,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388096.1"
        },
        {
          "aa_ref": "I",
          "aa_alt": "L",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.700A>C",
          "hgvs_p": "p.Ile234Leu",
          "transcript": "NM_001388097.1",
          "protein_id": "NP_001375026.1",
          "transcript_support_level": null,
          "aa_start": 234,
          "aa_end": null,
          "aa_length": 505,
          "cds_start": 700,
          "cds_end": null,
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          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 459,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1380,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3391,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000947502.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "TENT2",
          "gene_hgnc_id": 26776,
          "hgvs_c": "c.228-5746A>C",
          "hgvs_p": null,
          "transcript": "NM_001388137.1",
          "protein_id": "NP_001375066.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 286,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 861,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4502,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001388137.1"
        }
      ],
      "gene_symbol": "TENT2",
      "gene_hgnc_id": 26776,
      "dbsnp": "rs1236961149",
      "frequency_reference_population": null,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 0,
      "gnomad_exomes_af": null,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": null,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": null,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.15914472937583923,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.07999999821186066,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.114,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.4066,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.32,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 4.775,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.08,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_001349549.2",
          "gene_symbol": "TENT2",
          "hgnc_id": 26776,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.712A>C",
          "hgvs_p": "p.Ile238Leu"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}
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