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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-79647825-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=79647825&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 79647825,
"ref": "G",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000453514.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.822-792G>C",
"hgvs_p": null,
"transcript": "NM_001114394.3",
"protein_id": "NP_001107866.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 484,
"cds_start": -4,
"cds_end": null,
"cds_length": 1455,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5100,
"mane_select": "ENST00000453514.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.822-792G>C",
"hgvs_p": null,
"transcript": "ENST00000453514.6",
"protein_id": "ENSP00000397563.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 484,
"cds_start": -4,
"cds_end": null,
"cds_length": 1455,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5100,
"mane_select": "NM_001114394.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.810-792G>C",
"hgvs_p": null,
"transcript": "ENST00000423041.6",
"protein_id": "ENSP00000393412.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 480,
"cds_start": -4,
"cds_end": null,
"cds_length": 1443,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3223,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.822-792G>C",
"hgvs_p": null,
"transcript": "ENST00000504233.5",
"protein_id": "ENSP00000421966.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2997,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.897-792G>C",
"hgvs_p": null,
"transcript": "NM_001349549.2",
"protein_id": "NP_001336478.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 509,
"cds_start": -4,
"cds_end": null,
"cds_length": 1530,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5175,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.897-792G>C",
"hgvs_p": null,
"transcript": "NM_001349550.2",
"protein_id": "NP_001336479.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 509,
"cds_start": -4,
"cds_end": null,
"cds_length": 1530,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4970,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.897-792G>C",
"hgvs_p": null,
"transcript": "NM_001388093.1",
"protein_id": "NP_001375022.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 509,
"cds_start": -4,
"cds_end": null,
"cds_length": 1530,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4934,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.897-792G>C",
"hgvs_p": null,
"transcript": "NM_001388094.1",
"protein_id": "NP_001375023.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 509,
"cds_start": -4,
"cds_end": null,
"cds_length": 1530,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4856,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.885-792G>C",
"hgvs_p": null,
"transcript": "NM_001349551.2",
"protein_id": "NP_001336480.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 505,
"cds_start": -4,
"cds_end": null,
"cds_length": 1518,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5163,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": 10,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.885-792G>C",
"hgvs_p": null,
"transcript": "NM_001388095.1",
"protein_id": "NP_001375024.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 505,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 5300,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.885-792G>C",
"hgvs_p": null,
"transcript": "NM_001388096.1",
"protein_id": "NP_001375025.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 505,
"cds_start": -4,
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"cdna_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
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"gene_symbol": "TENT2",
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"hgvs_c": "c.885-792G>C",
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"transcript": "NM_001388097.1",
"protein_id": "NP_001375026.1",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 8,
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"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.882-792G>C",
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"transcript": "NM_001388098.1",
"protein_id": "NP_001375027.1",
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"aa_start": null,
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 8,
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"gene_symbol": "TENT2",
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"hgvs_c": "c.852-792G>C",
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"transcript": "NM_001388099.1",
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},
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],
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"gene_symbol": "TENT2",
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"transcript": "NM_001388100.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 8,
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"gene_symbol": "TENT2",
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"hgvs_c": "c.840-792G>C",
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"transcript": "NM_001388101.1",
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},
{
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],
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"gene_symbol": "TENT2",
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"hgvs_c": "c.822-792G>C",
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"transcript": "NM_001114393.3",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 9,
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"gene_symbol": "TENT2",
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"hgvs_c": "c.822-792G>C",
"hgvs_p": null,
"transcript": "NM_001349552.2",
"protein_id": "NP_001336481.1",
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},
{
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],
"exon_rank": null,
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"exon_count": 17,
"intron_rank": 10,
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"gene_symbol": "TENT2",
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"hgvs_c": "c.822-792G>C",
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"transcript": "NM_001349553.2",
"protein_id": "NP_001336482.1",
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],
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"gene_symbol": "TENT2",
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},
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],
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"gene_symbol": "TENT2",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 8,
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"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.822-792G>C",
"hgvs_p": null,
"transcript": "NM_001388105.1",
"protein_id": "NP_001375034.1",
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 9,
"intron_rank_end": null,
"gene_symbol": "TENT2",
"gene_hgnc_id": 26776,
"hgvs_c": "c.822-792G>C",
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"transcript": "NM_001388106.1",
"protein_id": "NP_001375035.1",
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"mane_select": null,
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