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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-82093042-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=82093042&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 82093042,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "ENST00000282185.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "NM_031482.5",
"protein_id": "NP_113670.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3029,
"mane_select": "ENST00000282185.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000282185.8",
"protein_id": "ENSP00000282185.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3029,
"mane_select": "NM_031482.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000458350.7",
"protein_id": "ENSP00000404938.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1795,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000513443.5",
"protein_id": "ENSP00000425182.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 125,
"cds_start": -4,
"cds_end": null,
"cds_length": 378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 978,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "NM_001131028.2",
"protein_id": "NP_001124500.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3164,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000513634.1",
"protein_id": "ENSP00000425225.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 184,
"cds_start": -4,
"cds_end": null,
"cds_length": 555,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 618,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000355178.8",
"protein_id": "ENSP00000347309.4",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 125,
"cds_start": -4,
"cds_end": null,
"cds_length": 378,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1438,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "n.216+34440T>C",
"hgvs_p": null,
"transcript": "ENST00000504770.5",
"protein_id": "ENSP00000424236.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 813,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "XM_005248610.6",
"protein_id": "XP_005248667.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3255,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "XM_005248611.6",
"protein_id": "XP_005248668.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 3264,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "XM_047417798.1",
"protein_id": "XP_047273754.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 3,
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"gene_symbol": "ATG10",
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"hgvs_c": "c.216+34440T>C",
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"transcript": "XM_047417799.1",
"protein_id": "XP_047273755.1",
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},
{
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"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null,
"transcript": "XM_047417800.1",
"protein_id": "XP_047273756.1",
"transcript_support_level": null,
"aa_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.109-71357T>C",
"hgvs_p": null,
"transcript": "XM_005248612.4",
"protein_id": "XP_005248669.1",
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"aa_start": null,
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 3,
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"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.109-71357T>C",
"hgvs_p": null,
"transcript": "XM_017009944.2",
"protein_id": "XP_016865433.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 184,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.109-71357T>C",
"hgvs_p": null,
"transcript": "XM_047417801.1",
"protein_id": "XP_047273757.1",
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},
{
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],
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"intron_rank": 2,
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"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.109-71357T>C",
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"transcript": "XM_047417802.1",
"protein_id": "XP_047273758.1",
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"feature": null
},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.109-71357T>C",
"hgvs_p": null,
"transcript": "XM_047417803.1",
"protein_id": "XP_047273759.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"hgvs_c": "c.90+34440T>C",
"hgvs_p": null,
"transcript": "XM_011543660.3",
"protein_id": "XP_011541962.1",
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"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 2728,
"mane_select": null,
"mane_plus": null,
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"feature": null
}
],
"gene_symbol": "ATG10",
"gene_hgnc_id": 20315,
"dbsnp": "rs324913",
"frequency_reference_population": 0.52350986,
"hom_count_reference_population": 21583,
"allele_count_reference_population": 79607,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.52351,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 79607,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 21583,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -1,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -1,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.114,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000282185.8",
"gene_symbol": "ATG10",
"hgnc_id": 20315,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.216+34440T>C",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}