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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-878410-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=878410&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 878410,
"ref": "T",
"alt": "A",
"effect": "missense_variant",
"transcript": "ENST00000467963.6",
"consequences": [
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1216A>T",
"hgvs_p": "p.Met406Leu",
"transcript": "NM_023924.5",
"protein_id": "NP_076413.3",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 597,
"cds_start": 1216,
"cds_end": null,
"cds_length": 1794,
"cdna_start": 1360,
"cdna_end": null,
"cdna_length": 2665,
"mane_select": "ENST00000467963.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1216A>T",
"hgvs_p": "p.Met406Leu",
"transcript": "ENST00000467963.6",
"protein_id": "ENSP00000419765.1",
"transcript_support_level": 2,
"aa_start": 406,
"aa_end": null,
"aa_length": 597,
"cds_start": 1216,
"cds_end": null,
"cds_length": 1794,
"cdna_start": 1360,
"cdna_end": null,
"cdna_length": 2665,
"mane_select": "NM_023924.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "n.250A>T",
"hgvs_p": null,
"transcript": "ENST00000475706.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 744,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "n.*908A>T",
"hgvs_p": null,
"transcript": "ENST00000489816.5",
"protein_id": "ENSP00000419752.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3170,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "n.*1181A>T",
"hgvs_p": null,
"transcript": "ENST00000490814.6",
"protein_id": "ENSP00000417431.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3477,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "n.*908A>T",
"hgvs_p": null,
"transcript": "ENST00000489816.5",
"protein_id": "ENSP00000419752.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3170,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "n.*1181A>T",
"hgvs_p": null,
"transcript": "ENST00000490814.6",
"protein_id": "ENSP00000417431.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3477,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1366A>T",
"hgvs_p": "p.Met456Leu",
"transcript": "NM_001375861.1",
"protein_id": "NP_001362790.1",
"transcript_support_level": null,
"aa_start": 456,
"aa_end": null,
"aa_length": 647,
"cds_start": 1366,
"cds_end": null,
"cds_length": 1944,
"cdna_start": 1510,
"cdna_end": null,
"cdna_length": 2815,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1339A>T",
"hgvs_p": "p.Met447Leu",
"transcript": "NM_001375862.1",
"protein_id": "NP_001362791.1",
"transcript_support_level": null,
"aa_start": 447,
"aa_end": null,
"aa_length": 638,
"cds_start": 1339,
"cds_end": null,
"cds_length": 1917,
"cdna_start": 1483,
"cdna_end": null,
"cdna_length": 2788,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1282A>T",
"hgvs_p": "p.Met428Leu",
"transcript": "NM_001375863.1",
"protein_id": "NP_001362792.1",
"transcript_support_level": null,
"aa_start": 428,
"aa_end": null,
"aa_length": 619,
"cds_start": 1282,
"cds_end": null,
"cds_length": 1860,
"cdna_start": 1426,
"cdna_end": null,
"cdna_length": 2731,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1276A>T",
"hgvs_p": "p.Met426Leu",
"transcript": "NM_001375877.1",
"protein_id": "NP_001362806.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 617,
"cds_start": 1276,
"cds_end": null,
"cds_length": 1854,
"cdna_start": 1420,
"cdna_end": null,
"cdna_length": 2725,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1222A>T",
"hgvs_p": "p.Met408Leu",
"transcript": "NM_001375878.1",
"protein_id": "NP_001362807.1",
"transcript_support_level": null,
"aa_start": 408,
"aa_end": null,
"aa_length": 599,
"cds_start": 1222,
"cds_end": null,
"cds_length": 1800,
"cdna_start": 1366,
"cdna_end": null,
"cdna_length": 2671,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1213A>T",
"hgvs_p": "p.Met405Leu",
"transcript": "NM_001375879.1",
"protein_id": "NP_001362808.1",
"transcript_support_level": null,
"aa_start": 405,
"aa_end": null,
"aa_length": 596,
"cds_start": 1213,
"cds_end": null,
"cds_length": 1791,
"cdna_start": 1357,
"cdna_end": null,
"cdna_length": 2662,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1057A>T",
"hgvs_p": "p.Met353Leu",
"transcript": "NM_001009877.3",
"protein_id": "NP_001009877.2",
"transcript_support_level": null,
"aa_start": 353,
"aa_end": null,
"aa_length": 544,
"cds_start": 1057,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1201,
"cdna_end": null,
"cdna_length": 2506,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1057A>T",
"hgvs_p": "p.Met353Leu",
"transcript": "ENST00000483173.5",
"protein_id": "ENSP00000419845.1",
"transcript_support_level": 2,
"aa_start": 353,
"aa_end": null,
"aa_length": 544,
"cds_start": 1057,
"cds_end": null,
"cds_length": 1635,
"cdna_start": 1197,
"cdna_end": null,
"cdna_length": 2120,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.928A>T",
"hgvs_p": "p.Met310Leu",
"transcript": "NM_001317951.2",
"protein_id": "NP_001304880.1",
"transcript_support_level": null,
"aa_start": 310,
"aa_end": null,
"aa_length": 501,
"cds_start": 928,
"cds_end": null,
"cds_length": 1506,
"cdna_start": 1539,
"cdna_end": null,
"cdna_length": 2844,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1276A>T",
"hgvs_p": "p.Met426Leu",
"transcript": "XM_024446195.2",
"protein_id": "XP_024301963.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 573,
"cds_start": 1276,
"cds_end": null,
"cds_length": 1722,
"cdna_start": 1420,
"cdna_end": null,
"cdna_length": 2084,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1276A>T",
"hgvs_p": "p.Met426Leu",
"transcript": "XM_047417600.1",
"protein_id": "XP_047273556.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 573,
"cds_start": 1276,
"cds_end": null,
"cds_length": 1722,
"cdna_start": 1420,
"cdna_end": null,
"cdna_length": 1974,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1276A>T",
"hgvs_p": "p.Met426Leu",
"transcript": "XM_047417601.1",
"protein_id": "XP_047273557.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 538,
"cds_start": 1276,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 1420,
"cdna_end": null,
"cdna_length": 1879,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1276A>T",
"hgvs_p": "p.Met426Leu",
"transcript": "XM_024446196.2",
"protein_id": "XP_024301964.1",
"transcript_support_level": null,
"aa_start": 426,
"aa_end": null,
"aa_length": 523,
"cds_start": 1276,
"cds_end": null,
"cds_length": 1572,
"cdna_start": 1420,
"cdna_end": null,
"cdna_length": 5279,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1216A>T",
"hgvs_p": "p.Met406Leu",
"transcript": "XM_047417602.1",
"protein_id": "XP_047273558.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 518,
"cds_start": 1216,
"cds_end": null,
"cds_length": 1557,
"cdna_start": 1360,
"cdna_end": null,
"cdna_length": 1819,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1216A>T",
"hgvs_p": "p.Met406Leu",
"transcript": "XM_047417603.1",
"protein_id": "XP_047273559.1",
"transcript_support_level": null,
"aa_start": 406,
"aa_end": null,
"aa_length": 503,
"cds_start": 1216,
"cds_end": null,
"cds_length": 1512,
"cdna_start": 1360,
"cdna_end": null,
"cdna_length": 5219,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "M",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "BRD9",
"gene_hgnc_id": 25818,
"hgvs_c": "c.1213A>T",
"hgvs_p": "p.Met405Leu",
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