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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 5-91072508-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=91072508&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "5",
      "pos": 91072508,
      "ref": "C",
      "alt": "T",
      "effect": "missense_variant",
      "transcript": "NM_032119.4",
      "consequences": [
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18214C>T",
          "hgvs_p": "p.Leu6072Phe",
          "transcript": "NM_032119.4",
          "protein_id": "NP_115495.3",
          "transcript_support_level": null,
          "aa_start": 6072,
          "aa_end": null,
          "aa_length": 6306,
          "cds_start": 18214,
          "cds_end": null,
          "cds_length": 18921,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000405460.9",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_032119.4"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18214C>T",
          "hgvs_p": "p.Leu6072Phe",
          "transcript": "ENST00000405460.9",
          "protein_id": "ENSP00000384582.2",
          "transcript_support_level": 1,
          "aa_start": 6072,
          "aa_end": null,
          "aa_length": 6306,
          "cds_start": 18214,
          "cds_end": null,
          "cds_length": 18921,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_032119.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000405460.9"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "n.5481C>T",
          "hgvs_p": null,
          "transcript": "ENST00000638510.1",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000638510.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 34,
          "exon_rank_end": null,
          "exon_count": 38,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.7168C>T",
          "hgvs_p": "p.Leu2390Phe",
          "transcript": "ENST00000425867.3",
          "protein_id": "ENSP00000392618.3",
          "transcript_support_level": 5,
          "aa_start": 2390,
          "aa_end": null,
          "aa_length": 2624,
          "cds_start": 7168,
          "cds_end": null,
          "cds_length": 7875,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000425867.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.298C>T",
          "hgvs_p": "p.Leu100Phe",
          "transcript": "ENST00000640815.1",
          "protein_id": "ENSP00000491767.1",
          "transcript_support_level": 2,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 334,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 1005,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000640815.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.298C>T",
          "hgvs_p": "p.Leu100Phe",
          "transcript": "ENST00000639821.1",
          "protein_id": "ENSP00000492216.1",
          "transcript_support_level": 3,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 192,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 579,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000639821.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.298C>T",
          "hgvs_p": "p.Leu100Phe",
          "transcript": "ENST00000640369.1",
          "protein_id": "ENSP00000491401.1",
          "transcript_support_level": 5,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 122,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 371,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000640369.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.298C>T",
          "hgvs_p": "p.Leu100Phe",
          "transcript": "ENST00000639707.1",
          "protein_id": "ENSP00000492328.1",
          "transcript_support_level": 3,
          "aa_start": 100,
          "aa_end": null,
          "aa_length": 122,
          "cds_start": 298,
          "cds_end": null,
          "cds_length": 369,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000639707.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18235C>T",
          "hgvs_p": "p.Leu6079Phe",
          "transcript": "XM_017009963.3",
          "protein_id": "XP_016865452.1",
          "transcript_support_level": null,
          "aa_start": 6079,
          "aa_end": null,
          "aa_length": 6313,
          "cds_start": 18235,
          "cds_end": null,
          "cds_length": 18942,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009963.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18232C>T",
          "hgvs_p": "p.Leu6078Phe",
          "transcript": "XM_017009964.3",
          "protein_id": "XP_016865453.1",
          "transcript_support_level": null,
          "aa_start": 6078,
          "aa_end": null,
          "aa_length": 6312,
          "cds_start": 18232,
          "cds_end": null,
          "cds_length": 18939,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009964.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18232C>T",
          "hgvs_p": "p.Leu6078Phe",
          "transcript": "XM_017009965.2",
          "protein_id": "XP_016865454.1",
          "transcript_support_level": null,
          "aa_start": 6078,
          "aa_end": null,
          "aa_length": 6312,
          "cds_start": 18232,
          "cds_end": null,
          "cds_length": 18939,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009965.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 90,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18211C>T",
          "hgvs_p": "p.Leu6071Phe",
          "transcript": "XM_047417824.1",
          "protein_id": "XP_047273780.1",
          "transcript_support_level": null,
          "aa_start": 6071,
          "aa_end": null,
          "aa_length": 6305,
          "cds_start": 18211,
          "cds_end": null,
          "cds_length": 18918,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047417824.1"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 85,
          "exon_rank_end": null,
          "exon_count": 89,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18154C>T",
          "hgvs_p": "p.Leu6052Phe",
          "transcript": "XM_017009966.3",
          "protein_id": "XP_016865455.1",
          "transcript_support_level": null,
          "aa_start": 6052,
          "aa_end": null,
          "aa_length": 6286,
          "cds_start": 18154,
          "cds_end": null,
          "cds_length": 18861,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009966.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 85,
          "exon_rank_end": null,
          "exon_count": 89,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18139C>T",
          "hgvs_p": "p.Leu6047Phe",
          "transcript": "XM_017009967.2",
          "protein_id": "XP_016865456.1",
          "transcript_support_level": null,
          "aa_start": 6047,
          "aa_end": null,
          "aa_length": 6281,
          "cds_start": 18139,
          "cds_end": null,
          "cds_length": 18846,
          "cdna_start": null,
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          "cdna_length": null,
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          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009967.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 85,
          "exon_rank_end": null,
          "exon_count": 89,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18055C>T",
          "hgvs_p": "p.Leu6019Phe",
          "transcript": "XM_017009968.3",
          "protein_id": "XP_016865457.1",
          "transcript_support_level": null,
          "aa_start": 6019,
          "aa_end": null,
          "aa_length": 6253,
          "cds_start": 18055,
          "cds_end": null,
          "cds_length": 18762,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009968.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 86,
          "exon_rank_end": null,
          "exon_count": 88,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.18235C>T",
          "hgvs_p": "p.Leu6079Phe",
          "transcript": "XM_017009969.3",
          "protein_id": "XP_016865458.1",
          "transcript_support_level": null,
          "aa_start": 6079,
          "aa_end": null,
          "aa_length": 6171,
          "cds_start": 18235,
          "cds_end": null,
          "cds_length": 18516,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017009969.3"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 56,
          "exon_rank_end": null,
          "exon_count": 60,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.11353C>T",
          "hgvs_p": "p.Leu3785Phe",
          "transcript": "XM_017009972.2",
          "protein_id": "XP_016865461.1",
          "transcript_support_level": null,
          "aa_start": 3785,
          "aa_end": null,
          "aa_length": 4019,
          "cds_start": 11353,
          "cds_end": null,
          "cds_length": 12060,
          "cdna_start": null,
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017009972.2"
        },
        {
          "aa_ref": "L",
          "aa_alt": "F",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 56,
          "exon_rank_end": null,
          "exon_count": 60,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "c.11332C>T",
          "hgvs_p": "p.Leu3778Phe",
          "transcript": "XM_017009973.2",
          "protein_id": "XP_016865462.1",
          "transcript_support_level": null,
          "aa_start": 3778,
          "aa_end": null,
          "aa_length": 4012,
          "cds_start": 11332,
          "cds_end": null,
          "cds_length": 12039,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_017009973.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "n.*1185C>T",
          "hgvs_p": null,
          "transcript": "ENST00000638990.1",
          "protein_id": "ENSP00000492781.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000638990.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRV1",
          "gene_hgnc_id": 17416,
          "hgvs_c": "n.*206C>T",
          "hgvs_p": null,
          "transcript": "ENST00000639431.1",
          "protein_id": "ENSP00000491057.1",
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
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        {
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        {
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          "biotype": "pseudogene",
          "feature": "ENST00000650017.1"
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      ],
      "gene_symbol": "ADGRV1",
      "gene_hgnc_id": 17416,
      "dbsnp": "rs769391232",
      "frequency_reference_population": 0.000008676145,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 14,
      "gnomad_exomes_af": 0.00000889512,
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      "gnomad_exomes_ac": 13,
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      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.312671959400177,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.019999999552965164,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.23,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.1576,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.35,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.027,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0.02,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -2,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4,BP6",
      "acmg_by_gene": [
        {
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          "benign_score": 2,
          "pathogenic_score": 0,
          "criteria": [
            "BP4",
            "BP6"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_032119.4",
          "gene_symbol": "ADGRV1",
          "hgnc_id": 17416,
          "effects": [
            "missense_variant"
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          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.18214C>T",
          "hgvs_p": "p.Leu6072Phe"
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        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4",
            "BP6"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "ENST00000650017.1",
          "gene_symbol": "LUCAT1",
          "hgnc_id": 48498,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.156-15654G>A",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "not provided",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:1",
      "phenotype_combined": "not provided",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.