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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 5-93876252-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=5&pos=93876252&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "5",
"pos": 93876252,
"ref": "T",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_032042.6",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "NM_032042.6",
"protein_id": "NP_114431.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 416,
"cds_start": null,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4684,
"mane_select": "ENST00000395965.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_032042.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000395965.8",
"protein_id": "ENSP00000379294.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 416,
"cds_start": null,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4684,
"mane_select": "NM_032042.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000395965.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000881906.1",
"protein_id": "ENSP00000551965.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 428,
"cds_start": null,
"cds_end": null,
"cds_length": 1287,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4345,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881906.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000881903.1",
"protein_id": "ENSP00000551962.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 416,
"cds_start": null,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7024,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881903.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000881908.1",
"protein_id": "ENSP00000551967.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 416,
"cds_start": null,
"cds_end": null,
"cds_length": 1251,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4525,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881908.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.720+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000933325.1",
"protein_id": "ENSP00000603384.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 394,
"cds_start": null,
"cds_end": null,
"cds_length": 1185,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4272,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000933325.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000881905.1",
"protein_id": "ENSP00000551964.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 377,
"cds_start": null,
"cds_end": null,
"cds_length": 1134,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4195,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881905.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.648+5218A>G",
"hgvs_p": null,
"transcript": "NM_001163417.1",
"protein_id": "NP_001156889.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 370,
"cds_start": null,
"cds_end": null,
"cds_length": 1113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4596,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001163417.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.648+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000509163.5",
"protein_id": "ENSP00000423841.1",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 370,
"cds_start": null,
"cds_end": null,
"cds_length": 1113,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1369,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000509163.5"
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.720+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000881910.1",
"protein_id": "ENSP00000551969.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 354,
"cds_start": null,
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"cdna_start": null,
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"cdna_length": 3304,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000881910.1"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.568-51985A>G",
"hgvs_p": null,
"transcript": "ENST00000881904.1",
"protein_id": "ENSP00000551963.1",
"transcript_support_level": null,
"aa_start": null,
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"aa_length": 343,
"cds_start": null,
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"cdna_start": null,
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"gene_symbol": "ARB2A",
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"hgvs_c": "c.568-51985A>G",
"hgvs_p": null,
"transcript": "ENST00000881909.1",
"protein_id": "ENSP00000551968.1",
"transcript_support_level": null,
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"cds_start": null,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 5,
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"gene_symbol": "ARB2A",
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"hgvs_c": "c.528+5218A>G",
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"transcript": "ENST00000881907.1",
"protein_id": "ENSP00000551966.1",
"transcript_support_level": null,
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"cds_start": null,
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},
{
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"strand": false,
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],
"exon_rank": null,
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"gene_symbol": "ARB2A",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 5,
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"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.456+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000505869.5",
"protein_id": "ENSP00000426284.1",
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},
{
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],
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"gene_symbol": "ARB2A",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 8,
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"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.345+5218A>G",
"hgvs_p": null,
"transcript": "ENST00000509739.5",
"protein_id": "ENSP00000421834.1",
"transcript_support_level": 2,
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "XM_006714717.4",
"protein_id": "XP_006714780.1",
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},
{
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],
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"intron_rank": 7,
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"gene_symbol": "ARB2A",
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},
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"strand": false,
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],
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"intron_rank": 7,
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"gene_symbol": "ARB2A",
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"hgvs_c": "c.786+5218A>G",
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"transcript": "XM_017009954.3",
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},
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],
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"intron_rank": 7,
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"gene_symbol": "ARB2A",
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"hgvs_c": "c.786+5218A>G",
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"transcript": "XM_005272103.5",
"protein_id": "XP_005272160.1",
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"biotype": "protein_coding",
"feature": "XM_005272103.5"
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ARB2A",
"gene_hgnc_id": 25365,
"hgvs_c": "c.786+5218A>G",
"hgvs_p": null,
"transcript": "XM_011543668.4",
"protein_id": "XP_011541970.1",
"transcript_support_level": null,
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"cdna_start": null,
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"mane_select": null,
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"biotype": "protein_coding",
"feature": "XM_011543668.4"
},
{
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"protein_coding": true,
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}
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}