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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-100685958-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=100685958&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 100685958,
"ref": "T",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000369162.7",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.2152-6206A>T",
"hgvs_p": null,
"transcript": "NM_006828.4",
"protein_id": "NP_006819.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2202,
"cds_start": -4,
"cds_end": null,
"cds_length": 6609,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8111,
"mane_select": "ENST00000369162.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.2152-6206A>T",
"hgvs_p": null,
"transcript": "ENST00000369162.7",
"protein_id": "ENSP00000358159.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 2202,
"cds_start": -4,
"cds_end": null,
"cds_length": 6609,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8111,
"mane_select": "NM_006828.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": 12,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "n.*1854-6206A>T",
"hgvs_p": null,
"transcript": "ENST00000324696.8",
"protein_id": "ENSP00000320252.4",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3618,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 42,
"intron_rank": 13,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.2167-6206A>T",
"hgvs_p": null,
"transcript": "XM_011535394.4",
"protein_id": "XP_011533696.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2207,
"cds_start": -4,
"cds_end": null,
"cds_length": 6624,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 8126,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.1858-6206A>T",
"hgvs_p": null,
"transcript": "XM_047418107.1",
"protein_id": "XP_047274063.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2104,
"cds_start": -4,
"cds_end": null,
"cds_length": 6315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7704,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 40,
"intron_rank": 11,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.1858-6206A>T",
"hgvs_p": null,
"transcript": "XM_047418108.1",
"protein_id": "XP_047274064.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 2104,
"cds_start": -4,
"cds_end": null,
"cds_length": 6315,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 36,
"intron_rank": 7,
"intron_rank_end": null,
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"hgvs_c": "c.733-6206A>T",
"hgvs_p": null,
"transcript": "XM_047418109.1",
"protein_id": "XP_047274065.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1729,
"cds_start": -4,
"cds_end": null,
"cds_length": 5190,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6465,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "ASCC3",
"gene_hgnc_id": 18697,
"dbsnp": "rs9373571",
"frequency_reference_population": 0.34781379,
"hom_count_reference_population": 10860,
"allele_count_reference_population": 52883,
"gnomad_exomes_af": null,
"gnomad_genomes_af": 0.347814,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": 52883,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": 10860,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8999999761581421,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.9,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.475,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000369162.7",
"gene_symbol": "ASCC3",
"hgnc_id": 18697,
"effects": [
"intron_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.2152-6206A>T",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}