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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-104730404-T-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=104730404&ref=T&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 104730404,
"ref": "T",
"alt": "A",
"effect": "synonymous_variant",
"transcript": "NM_020771.4",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2526A>T",
"hgvs_p": "p.Pro842Pro",
"transcript": "NM_020771.4",
"protein_id": "NP_065822.2",
"transcript_support_level": null,
"aa_start": 842,
"aa_end": null,
"aa_length": 909,
"cds_start": 2526,
"cds_end": null,
"cds_length": 2730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000262903.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_020771.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2526A>T",
"hgvs_p": "p.Pro842Pro",
"transcript": "ENST00000262903.9",
"protein_id": "ENSP00000262903.4",
"transcript_support_level": 1,
"aa_start": 842,
"aa_end": null,
"aa_length": 909,
"cds_start": 2526,
"cds_end": null,
"cds_length": 2730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_020771.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262903.9"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "n.3547A>T",
"hgvs_p": null,
"transcript": "ENST00000369127.8",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000369127.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "n.*2188A>T",
"hgvs_p": null,
"transcript": "ENST00000416605.6",
"protein_id": "ENSP00000392425.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000416605.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "n.1040A>T",
"hgvs_p": null,
"transcript": "ENST00000517995.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000517995.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "n.1967A>T",
"hgvs_p": null,
"transcript": "ENST00000518228.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000518228.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 26,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "n.*2188A>T",
"hgvs_p": null,
"transcript": "ENST00000416605.6",
"protein_id": "ENSP00000392425.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000416605.6"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2559A>T",
"hgvs_p": "p.Pro853Pro",
"transcript": "ENST00000851410.1",
"protein_id": "ENSP00000521469.1",
"transcript_support_level": null,
"aa_start": 853,
"aa_end": null,
"aa_length": 920,
"cds_start": 2559,
"cds_end": null,
"cds_length": 2763,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851410.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2520A>T",
"hgvs_p": "p.Pro840Pro",
"transcript": "ENST00000851409.1",
"protein_id": "ENSP00000521468.1",
"transcript_support_level": null,
"aa_start": 840,
"aa_end": null,
"aa_length": 907,
"cds_start": 2520,
"cds_end": null,
"cds_length": 2724,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851409.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2451A>T",
"hgvs_p": "p.Pro817Pro",
"transcript": "ENST00000950221.1",
"protein_id": "ENSP00000620280.1",
"transcript_support_level": null,
"aa_start": 817,
"aa_end": null,
"aa_length": 884,
"cds_start": 2451,
"cds_end": null,
"cds_length": 2655,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950221.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2436A>T",
"hgvs_p": "p.Pro812Pro",
"transcript": "ENST00000914227.1",
"protein_id": "ENSP00000584286.1",
"transcript_support_level": null,
"aa_start": 812,
"aa_end": null,
"aa_length": 879,
"cds_start": 2436,
"cds_end": null,
"cds_length": 2640,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914227.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2430A>T",
"hgvs_p": "p.Pro810Pro",
"transcript": "ENST00000950219.1",
"protein_id": "ENSP00000620278.1",
"transcript_support_level": null,
"aa_start": 810,
"aa_end": null,
"aa_length": 877,
"cds_start": 2430,
"cds_end": null,
"cds_length": 2634,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950219.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2427A>T",
"hgvs_p": "p.Pro809Pro",
"transcript": "ENST00000914226.1",
"protein_id": "ENSP00000584285.1",
"transcript_support_level": null,
"aa_start": 809,
"aa_end": null,
"aa_length": 876,
"cds_start": 2427,
"cds_end": null,
"cds_length": 2631,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000914226.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2424A>T",
"hgvs_p": "p.Pro808Pro",
"transcript": "NM_001321083.2",
"protein_id": "NP_001308012.1",
"transcript_support_level": null,
"aa_start": 808,
"aa_end": null,
"aa_length": 875,
"cds_start": 2424,
"cds_end": null,
"cds_length": 2628,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321083.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2394A>T",
"hgvs_p": "p.Pro798Pro",
"transcript": "NM_001321080.2",
"protein_id": "NP_001308009.1",
"transcript_support_level": null,
"aa_start": 798,
"aa_end": null,
"aa_length": 865,
"cds_start": 2394,
"cds_end": null,
"cds_length": 2598,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001321080.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2304A>T",
"hgvs_p": "p.Pro768Pro",
"transcript": "ENST00000851408.1",
"protein_id": "ENSP00000521467.1",
"transcript_support_level": null,
"aa_start": 768,
"aa_end": null,
"aa_length": 835,
"cds_start": 2304,
"cds_end": null,
"cds_length": 2508,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851408.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 23,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2292A>T",
"hgvs_p": "p.Pro764Pro",
"transcript": "NM_001350554.2",
"protein_id": "NP_001337483.1",
"transcript_support_level": null,
"aa_start": 764,
"aa_end": null,
"aa_length": 831,
"cds_start": 2292,
"cds_end": null,
"cds_length": 2496,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001350554.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2235A>T",
"hgvs_p": "p.Pro745Pro",
"transcript": "NM_001350555.2",
"protein_id": "NP_001337484.1",
"transcript_support_level": null,
"aa_start": 745,
"aa_end": null,
"aa_length": 812,
"cds_start": 2235,
"cds_end": null,
"cds_length": 2439,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001350555.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2235A>T",
"hgvs_p": "p.Pro745Pro",
"transcript": "ENST00000851407.1",
"protein_id": "ENSP00000521466.1",
"transcript_support_level": null,
"aa_start": 745,
"aa_end": null,
"aa_length": 812,
"cds_start": 2235,
"cds_end": null,
"cds_length": 2439,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000851407.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2130A>T",
"hgvs_p": "p.Pro710Pro",
"transcript": "ENST00000950222.1",
"protein_id": "ENSP00000620281.1",
"transcript_support_level": null,
"aa_start": 710,
"aa_end": null,
"aa_length": 777,
"cds_start": 2130,
"cds_end": null,
"cds_length": 2334,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000950222.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2040A>T",
"hgvs_p": "p.Pro680Pro",
"transcript": "NM_001350556.2",
"protein_id": "NP_001337485.1",
"transcript_support_level": null,
"aa_start": 680,
"aa_end": null,
"aa_length": 747,
"cds_start": 2040,
"cds_end": null,
"cds_length": 2244,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001350556.2"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "HACE1",
"gene_hgnc_id": 21033,
"hgvs_c": "c.2022A>T",
"hgvs_p": "p.Pro674Pro",
"transcript": "NM_001321084.2",
"protein_id": "NP_001308013.1",
"transcript_support_level": null,
"aa_start": 674,
"aa_end": null,
"aa_length": 741,
"cds_start": 2022,
"cds_end": null,
"cds_length": 2226,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
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}