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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 6-127287551-T-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=127287551&ref=T&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "RNF146",
          "hgnc_id": 21336,
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": 0,
          "transcript": "NM_001242849.2",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_score": 0,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": null,
      "alphamissense_score": 0.0609,
      "alt": "A",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Benign",
      "bayesdelnoaf_score": -0.58,
      "chr": "6",
      "clinvar_classification": "",
      "clinvar_disease": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "computational_prediction_selected": "Benign",
      "computational_score_selected": 0.07895132899284363,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2119,
          "cdna_start": 1108,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001242850.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000368314.6",
          "protein_coding": true,
          "protein_id": "NP_001229779.1",
          "strand": true,
          "transcript": "NM_001242850.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2119,
          "cdna_start": 1108,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000368314.6",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_001242850.2",
          "protein_coding": true,
          "protein_id": "ENSP00000357297.1",
          "strand": true,
          "transcript": "ENST00000368314.6",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2289,
          "cdna_start": 1278,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001242849.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229778.1",
          "strand": true,
          "transcript": "NM_001242849.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2085,
          "cdna_start": 1074,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "NM_001242851.1",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229780.1",
          "strand": true,
          "transcript": "NM_001242851.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2070,
          "cdna_start": 1259,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000610153.1",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000476814.1",
          "strand": true,
          "transcript": "ENST00000610153.1",
          "transcript_support_level": 2
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1913,
          "cdna_start": 1107,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000911117.1",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000581176.1",
          "strand": true,
          "transcript": "ENST00000911117.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2730,
          "cdna_start": 1927,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 2,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000911118.1",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000581177.1",
          "strand": true,
          "transcript": "ENST00000911118.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1985,
          "cdna_start": 1174,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000917447.1",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000587506.1",
          "strand": true,
          "transcript": "ENST00000917447.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2526,
          "cdna_start": 1515,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001242844.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229773.1",
          "strand": true,
          "transcript": "NM_001242844.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2475,
          "cdna_start": 1464,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001242845.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229774.1",
          "strand": true,
          "transcript": "NM_001242845.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2388,
          "cdna_start": 1377,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001242846.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229775.1",
          "strand": true,
          "transcript": "NM_001242846.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2417,
          "cdna_start": 1406,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001242847.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229776.1",
          "strand": true,
          "transcript": "NM_001242847.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2247,
          "cdna_start": 1236,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 4,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "NM_001242848.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229777.1",
          "strand": true,
          "transcript": "NM_001242848.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2506,
          "cdna_start": 1495,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_001242852.2",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_001229781.1",
          "strand": true,
          "transcript": "NM_001242852.2",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2356,
          "cdna_start": 1345,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "NM_030963.4",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "NP_112225.2",
          "strand": true,
          "transcript": "NM_030963.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2169,
          "cdna_start": 1358,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 5,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000608991.5",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000477168.1",
          "strand": true,
          "transcript": "ENST00000608991.5",
          "transcript_support_level": 4
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 359,
          "aa_ref": "L",
          "aa_start": 313,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2238,
          "cdna_start": 1227,
          "cds_end": null,
          "cds_length": 1080,
          "cds_start": 938,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 3,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "XM_017011336.3",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.938T>A",
          "hgvs_p": "p.Leu313His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_016866825.1",
          "strand": true,
          "transcript": "XM_017011336.3",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2445,
          "cdna_start": 1434,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "XM_011536161.4",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "XP_011534463.1",
          "strand": true,
          "transcript": "XM_011536161.4",
          "transcript_support_level": null
        },
        {
          "aa_alt": "H",
          "aa_end": null,
          "aa_length": 358,
          "aa_ref": "L",
          "aa_start": 312,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2477,
          "cdna_start": 1466,
          "cds_end": null,
          "cds_length": 1077,
          "cds_start": 935,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 6,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "XM_011536163.4",
          "gene_hgnc_id": 21336,
          "gene_symbol": "RNF146",
          "hgvs_c": "c.935T>A",
          "hgvs_p": "p.Leu312His",
          "intron_rank": null,
          "intron_rank_end": null,
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For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.