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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-13053411-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=13053411&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 13053411,
"ref": "C",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_001322314.4",
"consequences": [
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_030948.6",
"protein_id": "NP_112210.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000332995.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_030948.6"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "ENST00000332995.12",
"protein_id": "ENSP00000329880.8",
"transcript_support_level": 2,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_030948.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000332995.12"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.300C>T",
"hgvs_p": "p.Val100Val",
"transcript": "NM_001322314.4",
"protein_id": "NP_001309243.1",
"transcript_support_level": null,
"aa_start": 100,
"aa_end": null,
"aa_length": 650,
"cds_start": 300,
"cds_end": null,
"cds_length": 1953,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322314.4"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.300C>T",
"hgvs_p": "p.Val100Val",
"transcript": "ENST00000675203.2",
"protein_id": "ENSP00000502172.2",
"transcript_support_level": null,
"aa_start": 100,
"aa_end": null,
"aa_length": 650,
"cds_start": 300,
"cds_end": null,
"cds_length": 1953,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000675203.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001322310.2",
"protein_id": "NP_001309239.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 649,
"cds_start": 297,
"cds_end": null,
"cds_length": 1950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322310.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001374581.2",
"protein_id": "NP_001361510.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 596,
"cds_start": 297,
"cds_end": null,
"cds_length": 1791,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001374581.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "ENST00000674595.1",
"protein_id": "ENSP00000502157.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 596,
"cds_start": 297,
"cds_end": null,
"cds_length": 1791,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674595.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001242648.4",
"protein_id": "NP_001229577.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001242648.4"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001322308.3",
"protein_id": "NP_001309237.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322308.3"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001322309.3",
"protein_id": "NP_001309238.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322309.3"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "ENST00000674637.1",
"protein_id": "ENSP00000501634.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000674637.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 15,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "ENST00000676159.1",
"protein_id": "ENSP00000501921.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 580,
"cds_start": 297,
"cds_end": null,
"cds_length": 1743,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000676159.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "NM_001322313.2",
"protein_id": "NP_001309242.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 557,
"cds_start": 21,
"cds_end": null,
"cds_length": 1674,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322313.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "ENST00000687600.1",
"protein_id": "ENSP00000509410.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 557,
"cds_start": 21,
"cds_end": null,
"cds_length": 1674,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000687600.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.297C>T",
"hgvs_p": "p.Val99Val",
"transcript": "NM_001374582.1",
"protein_id": "NP_001361511.1",
"transcript_support_level": null,
"aa_start": 99,
"aa_end": null,
"aa_length": 547,
"cds_start": 297,
"cds_end": null,
"cds_length": 1644,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001374582.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.159C>T",
"hgvs_p": "p.Val53Val",
"transcript": "ENST00000689548.1",
"protein_id": "ENSP00000509837.1",
"transcript_support_level": null,
"aa_start": 53,
"aa_end": null,
"aa_length": 534,
"cds_start": 159,
"cds_end": null,
"cds_length": 1605,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000689548.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "NM_001374583.2",
"protein_id": "NP_001361512.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 504,
"cds_start": 21,
"cds_end": null,
"cds_length": 1515,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001374583.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "NM_001322311.2",
"protein_id": "NP_001309240.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 488,
"cds_start": 21,
"cds_end": null,
"cds_length": 1467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322311.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "NM_001322312.3",
"protein_id": "NP_001309241.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 488,
"cds_start": 21,
"cds_end": null,
"cds_length": 1467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001322312.3"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "ENST00000482982.2",
"protein_id": "ENSP00000501726.1",
"transcript_support_level": 3,
"aa_start": 7,
"aa_end": null,
"aa_length": 488,
"cds_start": 21,
"cds_end": null,
"cds_length": 1467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000482982.2"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "ENST00000676234.1",
"protein_id": "ENSP00000502037.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 488,
"cds_start": 21,
"cds_end": null,
"cds_length": 1467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000676234.1"
},
{
"aa_ref": "V",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PHACTR1",
"gene_hgnc_id": 20990,
"hgvs_c": "c.21C>T",
"hgvs_p": "p.Val7Val",
"transcript": "ENST00000692995.1",
"protein_id": "ENSP00000509690.1",
"transcript_support_level": null,
"aa_start": 7,
"aa_end": null,
"aa_length": 488,
"cds_start": 21,
"cds_end": null,
"cds_length": 1467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000692995.1"
},
{
"aa_ref": "V",
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"computational_score_selected": 0.07599999755620956,
"computational_prediction_selected": "Benign",
"computational_source_selected": "REVEL",
"splice_score_selected": 0.03999999910593033,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.076,
"revel_prediction": "Benign",
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.4,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.18,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.04,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
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"acmg_score": -9,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Moderate,BP6_Moderate,BP7,BS2",
"acmg_by_gene": [
{
"score": -9,
"benign_score": 9,
"pathogenic_score": 0,
"criteria": [
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"BP7",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_001322314.4",
"gene_symbol": "PHACTR1",
"hgnc_id": 20990,
"effects": [
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],
"inheritance_mode": "AD",
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],
"clinvar_disease": "PHACTR1-related disorder,not provided",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not provided|PHACTR1-related disorder",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}