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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-135196858-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=135196858&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 135196858,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000341911.10",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000528140.5",
"protein_id": "ENSP00000432877.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2021,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000529262.5",
"protein_id": "ENSP00000433844.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2427,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000531737.5",
"protein_id": "ENSP00000432168.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2436,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*127G>A",
"hgvs_p": null,
"transcript": "ENST00000533384.5",
"protein_id": "ENSP00000432811.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2521,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 17,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*127G>A",
"hgvs_p": null,
"transcript": "ENST00000533808.5",
"protein_id": "ENSP00000435293.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3349,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*127G>A",
"hgvs_p": null,
"transcript": "ENST00000533837.5",
"protein_id": "ENSP00000434639.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3492,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*127G>A",
"hgvs_p": null,
"transcript": "ENST00000534736.1",
"protein_id": "ENSP00000432042.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 801,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000528140.5",
"protein_id": "ENSP00000432877.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2021,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000529262.5",
"protein_id": "ENSP00000433844.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2427,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*84G>A",
"hgvs_p": null,
"transcript": "ENST00000531737.5",
"protein_id": "ENSP00000432168.1",
"transcript_support_level": 1,
"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": null,
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"gene_symbol": "MYB",
"gene_hgnc_id": 7545,
"hgvs_c": "n.*127G>A",
"hgvs_p": null,
"transcript": "ENST00000533384.5",
"protein_id": "ENSP00000432811.1",
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},
{
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"protein_coding": false,
"strand": true,
"consequences": [
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],
"exon_rank": 10,
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"exon_count": 17,
"intron_rank": null,
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"gene_symbol": "MYB",
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"hgvs_c": "n.*127G>A",
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},
{
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"strand": true,
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],
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"gene_symbol": "MYB",
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"hgvs_c": "n.*127G>A",
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"transcript": "ENST00000533837.5",
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},
{
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],
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"gene_symbol": "MYB",
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"hgvs_c": "n.*127G>A",
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"transcript": "ENST00000534736.1",
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},
{
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],
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},
{
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"consequences": [
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],
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"hgvs_c": "c.1204-103G>A",
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},
{
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],
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},
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],
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"intron_rank": 9,
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"gene_symbol": "MYB",
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"hgvs_c": "c.1156-103G>A",
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"transcript": "ENST00000534121.5",
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},
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],
"exon_rank": null,
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"intron_rank": 9,
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"gene_symbol": "MYB",
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"hgvs_c": "c.1203+856G>A",
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},
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],
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],
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},
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],
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"gene_symbol": "MYB",
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"hgvs_c": "c.1203+856G>A",
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"transcript": "ENST00000534044.5",
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},
{
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"protein_coding": true,
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"consequences": [
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],
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"exon_count": 14,
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"intron_rank_end": null,
"gene_symbol": "MYB",
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"hgvs_c": "c.949-2050G>A",
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"protein_id": "ENSP00000435938.1",
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