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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-137868378-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=137868378&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 137868378,
"ref": "A",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000612899.5",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+836A>G",
"hgvs_p": null,
"transcript": "NM_001270508.2",
"protein_id": "NP_001257437.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4665,
"mane_select": "ENST00000612899.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+836A>G",
"hgvs_p": null,
"transcript": "ENST00000612899.5",
"protein_id": "ENSP00000481570.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4665,
"mane_select": "NM_001270508.2",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+884A>G",
"hgvs_p": null,
"transcript": "ENST00000237289.8",
"protein_id": "ENSP00000237289.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4432,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+860A>G",
"hgvs_p": null,
"transcript": "NM_001270507.2",
"protein_id": "NP_001257436.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4641,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+884A>G",
"hgvs_p": null,
"transcript": "NM_006290.4",
"protein_id": "NP_006281.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4617,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+860A>G",
"hgvs_p": null,
"transcript": "ENST00000420009.6",
"protein_id": "ENSP00000401562.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3861,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+836A>G",
"hgvs_p": null,
"transcript": "ENST00000421450.2",
"protein_id": "ENSP00000393577.2",
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4689,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+642A>G",
"hgvs_p": null,
"transcript": "ENST00000433680.2",
"protein_id": "ENSP00000409845.2",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4533,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "n.174+884A>G",
"hgvs_p": null,
"transcript": "ENST00000698329.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5432,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "n.-16+836A>G",
"hgvs_p": null,
"transcript": "ENST00000711061.1",
"protein_id": "ENSP00000518561.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4683,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+1406A>G",
"hgvs_p": null,
"transcript": "XM_011536095.2",
"protein_id": "XP_011534397.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 790,
"cds_start": -4,
"cds_end": null,
"cds_length": 2373,
"cdna_start": null,
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"cdna_length": 4699,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+137A>G",
"hgvs_p": null,
"transcript": "XM_024446533.2",
"protein_id": "XP_024302301.1",
"transcript_support_level": null,
"aa_start": null,
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"cds_start": -4,
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"cdna_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 9,
"intron_rank": 1,
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"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+1406A>G",
"hgvs_p": null,
"transcript": "XM_047419283.1",
"protein_id": "XP_047275239.1",
"transcript_support_level": null,
"aa_start": null,
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"biotype": null,
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},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 1,
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"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+836A>G",
"hgvs_p": null,
"transcript": "XM_011536096.3",
"protein_id": "XP_011534398.1",
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},
{
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"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 8,
"intron_rank": 1,
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"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+884A>G",
"hgvs_p": null,
"transcript": "XM_047419284.1",
"protein_id": "XP_047275240.1",
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
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"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"hgvs_c": "c.-16+860A>G",
"hgvs_p": null,
"transcript": "XM_047419285.1",
"protein_id": "XP_047275241.1",
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},
{
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"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
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"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WAKMAR2",
"gene_hgnc_id": 53754,
"hgvs_c": "n.-145T>C",
"hgvs_p": null,
"transcript": "ENST00000606998.2",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WAKMAR2",
"gene_hgnc_id": 53754,
"hgvs_c": "n.-145T>C",
"hgvs_p": null,
"transcript": "ENST00000763029.1",
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},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
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"gene_symbol": "WAKMAR2",
"gene_hgnc_id": 53754,
"hgvs_c": "n.-193T>C",
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"transcript": "ENST00000763033.1",
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},
{
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"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
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"exon_count": 3,
"intron_rank": null,
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"gene_symbol": "WAKMAR2",
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"hgvs_c": "n.-202T>C",
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"transcript": "ENST00000763055.1",
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},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "WAKMAR2",
"gene_hgnc_id": 53754,
"hgvs_c": "n.-145T>C",
"hgvs_p": null,
"transcript": "NR_049793.1",
"protein_id": null,
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"feature": null
}
],
"gene_symbol": "TNFAIP3",
"gene_hgnc_id": 11896,
"dbsnp": "rs5029926",
"frequency_reference_population": 0.19146769,
"hom_count_reference_population": 5022,
"allele_count_reference_population": 29141,
"gnomad_exomes_af": 0.0743243,
"gnomad_genomes_af": 0.191582,
"gnomad_exomes_ac": 11,
"gnomad_genomes_ac": 29130,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 5022,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.8600000143051147,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.86,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.867,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -12,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BA1",
"acmg_by_gene": [
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000612899.5",
"gene_symbol": "TNFAIP3",
"hgnc_id": 11896,
"effects": [
"intron_variant"
],
"inheritance_mode": "Unknown,AD",
"hgvs_c": "c.-16+836A>G",
"hgvs_p": null
},
{
"score": -12,
"benign_score": 12,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BA1"
],
"verdict": "Benign",
"transcript": "ENST00000606998.2",
"gene_symbol": "WAKMAR2",
"hgnc_id": 53754,
"effects": [
"upstream_gene_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.-145T>C",
"hgvs_p": null
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}