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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 6-142367617-C-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=142367617&ref=C&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "6",
      "pos": 142367617,
      "ref": "C",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_198569.3",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "NM_198569.3",
          "protein_id": "NP_940971.2",
          "transcript_support_level": null,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1250,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3753,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000367609.8",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_198569.3"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000367609.8",
          "protein_id": "ENSP00000356581.3",
          "transcript_support_level": 1,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1250,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3753,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_198569.3",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000367609.8"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000367608.6",
          "protein_id": "ENSP00000356580.2",
          "transcript_support_level": 1,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1222,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3669,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000367608.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000230173.10",
          "protein_id": "ENSP00000230173.6",
          "transcript_support_level": 1,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1221,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3666,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000230173.10"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000296932.13",
          "protein_id": "ENSP00000296932.8",
          "transcript_support_level": 1,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1193,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3582,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000296932.13"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000968517.1",
          "protein_id": "ENSP00000638576.1",
          "transcript_support_level": null,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1264,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3795,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000968517.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.155C>A",
          "hgvs_p": "p.Thr52Asn",
          "transcript": "ENST00000968518.1",
          "protein_id": "ENSP00000638577.1",
          "transcript_support_level": null,
          "aa_start": 52,
          "aa_end": null,
          "aa_length": 1223,
          "cds_start": 155,
          "cds_end": null,
          "cds_length": 3672,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000968518.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "NM_001032395.3",
          "protein_id": "NP_001027567.2",
          "transcript_support_level": null,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1222,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3669,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001032395.3"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "NM_020455.6",
          "protein_id": "NP_065188.5",
          "transcript_support_level": null,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1221,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 3666,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_020455.6"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "NM_001032394.3",
          "protein_id": "NP_001027566.2",
          "transcript_support_level": null,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 1193,
          "cds_start": 152,
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          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001032394.3"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.149C>A",
          "hgvs_p": "p.Thr50Asn",
          "transcript": "ENST00000541199.5",
          "protein_id": "ENSP00000446287.1",
          "transcript_support_level": 4,
          "aa_start": 50,
          "aa_end": null,
          "aa_length": 240,
          "cds_start": 149,
          "cds_end": null,
          "cds_length": 724,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000541199.5"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
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          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "ENST00000435011.6",
          "protein_id": "ENSP00000438366.1",
          "transcript_support_level": 4,
          "aa_start": 51,
          "aa_end": null,
          "aa_length": 140,
          "cds_start": 152,
          "cds_end": null,
          "cds_length": 425,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
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        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.155C>A",
          "hgvs_p": "p.Thr52Asn",
          "transcript": "XM_006715516.3",
          "protein_id": "XP_006715579.1",
          "transcript_support_level": null,
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          "aa_end": null,
          "aa_length": 1251,
          "cds_start": 155,
          "cds_end": null,
          "cds_length": 3756,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_006715516.3"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn",
          "transcript": "XM_011535964.2",
          "protein_id": "XP_011534266.1",
          "transcript_support_level": null,
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        {
          "aa_ref": "T",
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          ],
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          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.149C>A",
          "hgvs_p": "p.Thr50Asn",
          "transcript": "XM_006715517.3",
          "protein_id": "XP_006715580.1",
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          "aa_end": null,
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          "cds_length": 3750,
          "cdna_start": null,
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          "biotype": "protein_coding",
          "feature": "XM_006715517.3"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
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          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.155C>A",
          "hgvs_p": "p.Thr52Asn",
          "transcript": "XM_006715518.3",
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        },
        {
          "aa_ref": "T",
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          "protein_coding": true,
          "strand": true,
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          ],
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          "exon_rank_end": null,
          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.155C>A",
          "hgvs_p": "p.Thr52Asn",
          "transcript": "XM_005267061.4",
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        {
          "aa_ref": "T",
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        {
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          ],
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          "intron_rank": null,
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          "hgvs_c": "c.152C>A",
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          "transcript": "XM_047419103.1",
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          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_047419103.1"
        },
        {
          "aa_ref": "T",
          "aa_alt": "N",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "ADGRG6",
          "gene_hgnc_id": 13841,
          "hgvs_c": "c.149C>A",
          "hgvs_p": "p.Thr50Asn",
          "transcript": "XM_047419104.1",
          "protein_id": "XP_047275060.1",
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          "cdna_start": null,
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        {
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          "biotype": "pseudogene",
          "feature": "ENST00000545477.1"
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      ],
      "gene_symbol": "ADGRG6",
      "gene_hgnc_id": 13841,
      "dbsnp": "rs374848824",
      "frequency_reference_population": 0.000006157551,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 9,
      "gnomad_exomes_af": 0.00000615755,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 9,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.13460397720336914,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.083,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0754,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.52,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 1.285,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 0,
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2,BP4_Moderate",
      "acmg_by_gene": [
        {
          "score": 0,
          "benign_score": 2,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Moderate"
          ],
          "verdict": "Uncertain_significance",
          "transcript": "NM_198569.3",
          "gene_symbol": "ADGRG6",
          "hgnc_id": 13841,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.152C>A",
          "hgvs_p": "p.Thr51Asn"
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      ],
      "clinvar_disease": "Inborn genetic diseases",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "Inborn genetic diseases",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}