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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-144730458-G-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=144730458&ref=G&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 144730458,
"ref": "G",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_007124.3",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 54,
"exon_rank_end": null,
"exon_count": 75,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"hgvs_c": "c.7911G>C",
"hgvs_p": "p.Glu2637Asp",
"transcript": "NM_007124.3",
"protein_id": "NP_009055.2",
"transcript_support_level": null,
"aa_start": 2637,
"aa_end": null,
"aa_length": 3433,
"cds_start": 7911,
"cds_end": null,
"cds_length": 10302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000367545.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_007124.3"
},
{
"aa_ref": "E",
"aa_alt": "D",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 54,
"exon_rank_end": null,
"exon_count": 75,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"hgvs_c": "c.7911G>C",
"hgvs_p": "p.Glu2637Asp",
"transcript": "ENST00000367545.8",
"protein_id": "ENSP00000356515.3",
"transcript_support_level": 5,
"aa_start": 2637,
"aa_end": null,
"aa_length": 3433,
"cds_start": 7911,
"cds_end": null,
"cds_length": 10302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_007124.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000367545.8"
},
{
"aa_ref": "E",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"hgvs_c": "c.576G>C",
"hgvs_p": "p.Glu192Asp",
"transcript": "NM_001375323.1",
"protein_id": "NP_001362252.1",
"transcript_support_level": null,
"aa_start": 192,
"aa_end": null,
"aa_length": 988,
"cds_start": 576,
"cds_end": null,
"cds_length": 2967,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001375323.1"
},
{
"aa_ref": "E",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 25,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"hgvs_c": "c.576G>C",
"hgvs_p": "p.Glu192Asp",
"transcript": "ENST00000367526.8",
"protein_id": "ENSP00000356496.4",
"transcript_support_level": 5,
"aa_start": 192,
"aa_end": null,
"aa_length": 988,
"cds_start": 576,
"cds_end": null,
"cds_length": 2967,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000367526.8"
},
{
"aa_ref": "E",
"aa_alt": "D",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"hgvs_c": "c.576G>C",
"hgvs_p": "p.Glu192Asp",
"transcript": "ENST00000367524.8",
"protein_id": "ENSP00000356494.4",
"transcript_support_level": 3,
"aa_start": 192,
"aa_end": null,
"aa_length": 975,
"cds_start": 576,
"cds_end": null,
"cds_length": 2928,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000367524.8"
}
],
"gene_symbol": "UTRN",
"gene_hgnc_id": 12635,
"dbsnp": "rs4305737",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.08824437856674194,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.165,
"revel_prediction": "Benign",
"alphamissense_score": 0.2408,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.3,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.071,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_007124.3",
"gene_symbol": "UTRN",
"hgnc_id": 12635,
"effects": [
"missense_variant"
],
"inheritance_mode": "Unknown",
"hgvs_c": "c.7911G>C",
"hgvs_p": "p.Glu2637Asp"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}