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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-17624770-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=17624770&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 17624770,
"ref": "T",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_001278209.2",
"consequences": [
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3965A>C",
"hgvs_p": "p.Asn1322Thr",
"transcript": "NM_005124.4",
"protein_id": "NP_005115.2",
"transcript_support_level": null,
"aa_start": 1322,
"aa_end": null,
"aa_length": 1475,
"cds_start": 3965,
"cds_end": null,
"cds_length": 4428,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000262077.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005124.4"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3965A>C",
"hgvs_p": "p.Asn1322Thr",
"transcript": "ENST00000262077.3",
"protein_id": "ENSP00000262077.3",
"transcript_support_level": 1,
"aa_start": 1322,
"aa_end": null,
"aa_length": 1475,
"cds_start": 3965,
"cds_end": null,
"cds_length": 4428,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_005124.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262077.3"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3839A>C",
"hgvs_p": "p.Asn1280Thr",
"transcript": "ENST00000613258.4",
"protein_id": "ENSP00000478627.1",
"transcript_support_level": 1,
"aa_start": 1280,
"aa_end": null,
"aa_length": 1433,
"cds_start": 3839,
"cds_end": null,
"cds_length": 4302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000613258.4"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.4058A>C",
"hgvs_p": "p.Asn1353Thr",
"transcript": "NM_001278209.2",
"protein_id": "NP_001265138.1",
"transcript_support_level": null,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1506,
"cds_start": 4058,
"cds_end": null,
"cds_length": 4521,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278209.2"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.4058A>C",
"hgvs_p": "p.Asn1353Thr",
"transcript": "ENST00000537253.5",
"protein_id": "ENSP00000444029.1",
"transcript_support_level": 2,
"aa_start": 1353,
"aa_end": null,
"aa_length": 1506,
"cds_start": 4058,
"cds_end": null,
"cds_length": 4521,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000537253.5"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.4034A>C",
"hgvs_p": "p.Asn1345Thr",
"transcript": "ENST00000874443.1",
"protein_id": "ENSP00000544502.1",
"transcript_support_level": null,
"aa_start": 1345,
"aa_end": null,
"aa_length": 1498,
"cds_start": 4034,
"cds_end": null,
"cds_length": 4497,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874443.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.4004A>C",
"hgvs_p": "p.Asn1335Thr",
"transcript": "ENST00000940942.1",
"protein_id": "ENSP00000611001.1",
"transcript_support_level": null,
"aa_start": 1335,
"aa_end": null,
"aa_length": 1488,
"cds_start": 4004,
"cds_end": null,
"cds_length": 4467,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940942.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3956A>C",
"hgvs_p": "p.Asn1319Thr",
"transcript": "ENST00000912068.1",
"protein_id": "ENSP00000582127.1",
"transcript_support_level": null,
"aa_start": 1319,
"aa_end": null,
"aa_length": 1472,
"cds_start": 3956,
"cds_end": null,
"cds_length": 4419,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912068.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3947A>C",
"hgvs_p": "p.Asn1316Thr",
"transcript": "ENST00000874441.1",
"protein_id": "ENSP00000544500.1",
"transcript_support_level": null,
"aa_start": 1316,
"aa_end": null,
"aa_length": 1469,
"cds_start": 3947,
"cds_end": null,
"cds_length": 4410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874441.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3941A>C",
"hgvs_p": "p.Asn1314Thr",
"transcript": "ENST00000874446.1",
"protein_id": "ENSP00000544505.1",
"transcript_support_level": null,
"aa_start": 1314,
"aa_end": null,
"aa_length": 1467,
"cds_start": 3941,
"cds_end": null,
"cds_length": 4404,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874446.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3929A>C",
"hgvs_p": "p.Asn1310Thr",
"transcript": "ENST00000874444.1",
"protein_id": "ENSP00000544503.1",
"transcript_support_level": null,
"aa_start": 1310,
"aa_end": null,
"aa_length": 1463,
"cds_start": 3929,
"cds_end": null,
"cds_length": 4392,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874444.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3911A>C",
"hgvs_p": "p.Asn1304Thr",
"transcript": "ENST00000874440.1",
"protein_id": "ENSP00000544499.1",
"transcript_support_level": null,
"aa_start": 1304,
"aa_end": null,
"aa_length": 1457,
"cds_start": 3911,
"cds_end": null,
"cds_length": 4374,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874440.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3893A>C",
"hgvs_p": "p.Asn1298Thr",
"transcript": "ENST00000912066.1",
"protein_id": "ENSP00000582125.1",
"transcript_support_level": null,
"aa_start": 1298,
"aa_end": null,
"aa_length": 1451,
"cds_start": 3893,
"cds_end": null,
"cds_length": 4356,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912066.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3887A>C",
"hgvs_p": "p.Asn1296Thr",
"transcript": "ENST00000912064.1",
"protein_id": "ENSP00000582123.1",
"transcript_support_level": null,
"aa_start": 1296,
"aa_end": null,
"aa_length": 1449,
"cds_start": 3887,
"cds_end": null,
"cds_length": 4350,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912064.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3866A>C",
"hgvs_p": "p.Asn1289Thr",
"transcript": "ENST00000912065.1",
"protein_id": "ENSP00000582124.1",
"transcript_support_level": null,
"aa_start": 1289,
"aa_end": null,
"aa_length": 1442,
"cds_start": 3866,
"cds_end": null,
"cds_length": 4329,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912065.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3863A>C",
"hgvs_p": "p.Asn1288Thr",
"transcript": "ENST00000874447.1",
"protein_id": "ENSP00000544506.1",
"transcript_support_level": null,
"aa_start": 1288,
"aa_end": null,
"aa_length": 1441,
"cds_start": 3863,
"cds_end": null,
"cds_length": 4326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874447.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3848A>C",
"hgvs_p": "p.Asn1283Thr",
"transcript": "ENST00000940941.1",
"protein_id": "ENSP00000611000.1",
"transcript_support_level": null,
"aa_start": 1283,
"aa_end": null,
"aa_length": 1436,
"cds_start": 3848,
"cds_end": null,
"cds_length": 4311,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000940941.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3839A>C",
"hgvs_p": "p.Asn1280Thr",
"transcript": "NM_001278210.2",
"protein_id": "NP_001265139.1",
"transcript_support_level": null,
"aa_start": 1280,
"aa_end": null,
"aa_length": 1433,
"cds_start": 3839,
"cds_end": null,
"cds_length": 4302,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278210.2"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3818A>C",
"hgvs_p": "p.Asn1273Thr",
"transcript": "ENST00000912070.1",
"protein_id": "ENSP00000582129.1",
"transcript_support_level": null,
"aa_start": 1273,
"aa_end": null,
"aa_length": 1426,
"cds_start": 3818,
"cds_end": null,
"cds_length": 4281,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912070.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3770A>C",
"hgvs_p": "p.Asn1257Thr",
"transcript": "ENST00000912067.1",
"protein_id": "ENSP00000582126.1",
"transcript_support_level": null,
"aa_start": 1257,
"aa_end": null,
"aa_length": 1410,
"cds_start": 3770,
"cds_end": null,
"cds_length": 4233,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000912067.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3749A>C",
"hgvs_p": "p.Asn1250Thr",
"transcript": "ENST00000874442.1",
"protein_id": "ENSP00000544501.1",
"transcript_support_level": null,
"aa_start": 1250,
"aa_end": null,
"aa_length": 1403,
"cds_start": 3749,
"cds_end": null,
"cds_length": 4212,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000874442.1"
},
{
"aa_ref": "N",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NUP153",
"gene_hgnc_id": 8062,
"hgvs_c": "c.3686A>C",
"hgvs_p": "p.Asn1229Thr",
"transcript": "ENST00000874445.1",
"protein_id": "ENSP00000544504.1",
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"aa_start": 1229,
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{
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"clinvar_review_status": "",
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"custom_annotations": null
}
],
"message": null
}