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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-31970674-T-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=31970674&ref=T&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 31970674,
"ref": "T",
"alt": "G",
"effect": "synonymous_variant",
"transcript": "NM_005510.4",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "NM_005510.4",
"protein_id": "NP_005501.2",
"transcript_support_level": null,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 960,
"cdna_end": null,
"cdna_length": 1469,
"mane_select": "ENST00000337523.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_005510.4"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "ENST00000337523.10",
"protein_id": "ENSP00000337759.5",
"transcript_support_level": 1,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 960,
"cdna_end": null,
"cdna_length": 1469,
"mane_select": "NM_005510.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000337523.10"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "ENST00000375356.7",
"protein_id": "ENSP00000364505.3",
"transcript_support_level": 1,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1053,
"cdna_end": null,
"cdna_length": 1533,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000375356.7"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "n.1250A>C",
"hgvs_p": null,
"transcript": "ENST00000473976.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2025,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000473976.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "n.1579A>C",
"hgvs_p": null,
"transcript": "ENST00000477826.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2093,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000477826.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "n.625A>C",
"hgvs_p": null,
"transcript": "ENST00000478221.5",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1132,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000478221.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "n.1242A>C",
"hgvs_p": null,
"transcript": "ENST00000492946.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1474,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000492946.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "n.838A>C",
"hgvs_p": null,
"transcript": "ENST00000498357.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1625,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000498357.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "NM_001438478.1",
"protein_id": "NP_001425407.1",
"transcript_support_level": null,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1207,
"cdna_end": null,
"cdna_length": 1716,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438478.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "NM_001438479.1",
"protein_id": "NP_001425408.1",
"transcript_support_level": null,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1004,
"cdna_end": null,
"cdna_length": 1513,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438479.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "ENST00000375349.7",
"protein_id": "ENSP00000364498.3",
"transcript_support_level": 5,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1156,
"cdna_end": null,
"cdna_length": 1667,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000375349.7"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.744A>C",
"hgvs_p": "p.Pro248Pro",
"transcript": "ENST00000968292.1",
"protein_id": "ENSP00000638351.1",
"transcript_support_level": null,
"aa_start": 248,
"aa_end": null,
"aa_length": 396,
"cds_start": 744,
"cds_end": null,
"cds_length": 1191,
"cdna_start": 1198,
"cdna_end": null,
"cdna_length": 1706,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968292.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.723A>C",
"hgvs_p": "p.Pro241Pro",
"transcript": "ENST00000858711.1",
"protein_id": "ENSP00000528770.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 389,
"cds_start": 723,
"cds_end": null,
"cds_length": 1170,
"cdna_start": 989,
"cdna_end": null,
"cdna_length": 1493,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858711.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.723A>C",
"hgvs_p": "p.Pro241Pro",
"transcript": "ENST00000913334.1",
"protein_id": "ENSP00000583393.1",
"transcript_support_level": null,
"aa_start": 241,
"aa_end": null,
"aa_length": 389,
"cds_start": 723,
"cds_end": null,
"cds_length": 1170,
"cdna_start": 1025,
"cdna_end": null,
"cdna_length": 1529,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000913334.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.639A>C",
"hgvs_p": "p.Pro213Pro",
"transcript": "ENST00000858708.1",
"protein_id": "ENSP00000528767.1",
"transcript_support_level": null,
"aa_start": 213,
"aa_end": null,
"aa_length": 361,
"cds_start": 639,
"cds_end": null,
"cds_length": 1086,
"cdna_start": 1029,
"cdna_end": null,
"cdna_length": 1540,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858708.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.639A>C",
"hgvs_p": "p.Pro213Pro",
"transcript": "ENST00000858709.1",
"protein_id": "ENSP00000528768.1",
"transcript_support_level": null,
"aa_start": 213,
"aa_end": null,
"aa_length": 361,
"cds_start": 639,
"cds_end": null,
"cds_length": 1086,
"cdna_start": 984,
"cdna_end": null,
"cdna_length": 1497,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000858709.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.639A>C",
"hgvs_p": "p.Pro213Pro",
"transcript": "ENST00000913336.1",
"protein_id": "ENSP00000583395.1",
"transcript_support_level": null,
"aa_start": 213,
"aa_end": null,
"aa_length": 361,
"cds_start": 639,
"cds_end": null,
"cds_length": 1086,
"cdna_start": 1095,
"cdna_end": null,
"cdna_length": 1600,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000913336.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.639A>C",
"hgvs_p": "p.Pro213Pro",
"transcript": "ENST00000968293.1",
"protein_id": "ENSP00000638352.1",
"transcript_support_level": null,
"aa_start": 213,
"aa_end": null,
"aa_length": 361,
"cds_start": 639,
"cds_end": null,
"cds_length": 1086,
"cdna_start": 1109,
"cdna_end": null,
"cdna_length": 1620,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000968293.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.192A>C",
"hgvs_p": "p.Pro64Pro",
"transcript": "NM_001371205.1",
"protein_id": "NP_001358134.1",
"transcript_support_level": null,
"aa_start": 64,
"aa_end": null,
"aa_length": 212,
"cds_start": 192,
"cds_end": null,
"cds_length": 639,
"cdna_start": 1018,
"cdna_end": null,
"cdna_length": 1527,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001371205.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.192A>C",
"hgvs_p": "p.Pro64Pro",
"transcript": "NM_001371206.1",
"protein_id": "NP_001358135.1",
"transcript_support_level": null,
"aa_start": 64,
"aa_end": null,
"aa_length": 212,
"cds_start": 192,
"cds_end": null,
"cds_length": 639,
"cdna_start": 860,
"cdna_end": null,
"cdna_length": 1369,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001371206.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.192A>C",
"hgvs_p": "p.Pro64Pro",
"transcript": "NM_001438480.1",
"protein_id": "NP_001425409.1",
"transcript_support_level": null,
"aa_start": 64,
"aa_end": null,
"aa_length": 212,
"cds_start": 192,
"cds_end": null,
"cds_length": 639,
"cdna_start": 598,
"cdna_end": null,
"cdna_length": 1107,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001438480.1"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DXO",
"gene_hgnc_id": 2992,
"hgvs_c": "c.162A>C",
"hgvs_p": "p.Pro54Pro",
"transcript": "ENST00000495340.5",
"protein_id": "ENSP00000419588.1",
"transcript_support_level": 5,
"aa_start": 54,
"aa_end": null,
"aa_length": 173,
"cds_start": 162,
"cds_end": null,
"cds_length": 522,
"cdna_start": 164,
"cdna_end": null,
"cdna_length": 586,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000495340.5"
},
{
"aa_ref": "P",
"aa_alt": "P",
"canonical": false,
"protein_coding": true,
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}