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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-35122034-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=35122034&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 35122034,
"ref": "G",
"alt": "A",
"effect": "intron_variant",
"transcript": "ENST00000311875.11",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.578+83C>T",
"hgvs_p": null,
"transcript": "NM_001370687.1",
"protein_id": "NP_001357616.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 503,
"cds_start": -4,
"cds_end": null,
"cds_length": 1512,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1855,
"mane_select": "ENST00000311875.11",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.578+83C>T",
"hgvs_p": null,
"transcript": "ENST00000311875.11",
"protein_id": "ENSP00000308708.6",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 503,
"cds_start": -4,
"cds_end": null,
"cds_length": 1512,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1855,
"mane_select": "NM_001370687.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.578+83C>T",
"hgvs_p": null,
"transcript": "ENST00000512012.5",
"protein_id": "ENSP00000425995.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 503,
"cds_start": -4,
"cds_end": null,
"cds_length": 1512,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1669,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.392+83C>T",
"hgvs_p": null,
"transcript": "ENST00000244645.7",
"protein_id": "ENSP00000244645.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 441,
"cds_start": -4,
"cds_end": null,
"cds_length": 1326,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2018,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.389+83C>T",
"hgvs_p": null,
"transcript": "ENST00000611141.4",
"protein_id": "ENSP00000478603.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 440,
"cds_start": -4,
"cds_end": null,
"cds_length": 1323,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2130,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "n.*546+83C>T",
"hgvs_p": null,
"transcript": "ENST00000455706.7",
"protein_id": "ENSP00000399012.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1962,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "n.*658+83C>T",
"hgvs_p": null,
"transcript": "ENST00000504758.6",
"protein_id": "ENSP00000421916.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
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"cds_length": null,
"cdna_start": null,
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"cdna_length": 1978,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "n.*643+83C>T",
"hgvs_p": null,
"transcript": "ENST00000505911.6",
"protein_id": "ENSP00000423293.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1974,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.617+83C>T",
"hgvs_p": null,
"transcript": "ENST00000673754.1",
"protein_id": "ENSP00000501201.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 516,
"cds_start": -4,
"cds_end": null,
"cds_length": 1551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1924,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.563+83C>T",
"hgvs_p": null,
"transcript": "NM_001261817.2",
"protein_id": "NP_001248746.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 498,
"cds_start": -4,
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"cds_length": 1497,
"cdna_start": null,
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"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.563+83C>T",
"hgvs_p": null,
"transcript": "ENST00000444780.7",
"protein_id": "ENSP00000404479.3",
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"aa_start": null,
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},
{
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"strand": false,
"consequences": [
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.479+83C>T",
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"transcript": "NM_001261818.2",
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},
{
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"strand": false,
"consequences": [
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.479+83C>T",
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"transcript": "ENST00000373974.8",
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},
{
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.464+83C>T",
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"transcript": "NM_001261819.2",
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],
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},
{
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.392+83C>T",
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"transcript": "NM_001366324.2",
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},
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],
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"hgvs_c": "c.392+83C>T",
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"transcript": "NM_018679.6",
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},
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.392+83C>T",
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"transcript": "ENST00000373979.6",
"protein_id": "ENSP00000363091.2",
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},
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 11,
"intron_rank": 6,
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"gene_symbol": "TCP11",
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"hgvs_c": "c.389+83C>T",
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"transcript": "NM_001261820.2",
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},
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],
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],
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},
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],
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"gene_symbol": "TCP11",
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"hgvs_c": "c.389+83C>T",
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"transcript": "ENST00000418521.6",
"protein_id": "ENSP00000415320.2",
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"feature": null
},
{
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"protein_coding": true,
"strand": false,
"consequences": [
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],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "TCP11",
"gene_hgnc_id": 11658,
"hgvs_c": "c.464+83C>T",
"hgvs_p": null,
"transcript": "NM_001366325.2",
"protein_id": "NP_001353254.1",
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},
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