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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-52757892-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=52757892&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 52757892,
"ref": "A",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_000846.5",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "NM_000846.5",
"protein_id": "NP_000837.3",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000493422.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000846.5"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000493422.3",
"protein_id": "ENSP00000420168.1",
"transcript_support_level": 1,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000846.5",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000493422.3"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873254.1",
"protein_id": "ENSP00000543313.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873254.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873256.1",
"protein_id": "ENSP00000543315.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873256.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873257.1",
"protein_id": "ENSP00000543316.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873257.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873260.1",
"protein_id": "ENSP00000543319.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873260.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873261.1",
"protein_id": "ENSP00000543320.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873261.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873262.1",
"protein_id": "ENSP00000543321.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873262.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873258.1",
"protein_id": "ENSP00000543317.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 219,
"cds_start": 56,
"cds_end": null,
"cds_length": 660,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873258.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873253.1",
"protein_id": "ENSP00000543312.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 201,
"cds_start": 56,
"cds_end": null,
"cds_length": 606,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873253.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873255.1",
"protein_id": "ENSP00000543314.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 201,
"cds_start": 56,
"cds_end": null,
"cds_length": 606,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873255.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "ENST00000873259.1",
"protein_id": "ENSP00000543318.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 178,
"cds_start": 56,
"cds_end": null,
"cds_length": 537,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000873259.1"
},
{
"aa_ref": "I",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr",
"transcript": "XM_047418684.1",
"protein_id": "XP_047274640.1",
"transcript_support_level": null,
"aa_start": 19,
"aa_end": null,
"aa_length": 222,
"cds_start": 56,
"cds_end": null,
"cds_length": 669,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047418684.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000301390",
"gene_hgnc_id": null,
"hgvs_c": "n.73-1717A>G",
"hgvs_p": null,
"transcript": "ENST00000778609.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000778609.1"
}
],
"gene_symbol": "GSTA2",
"gene_hgnc_id": 4627,
"dbsnp": "rs747060432",
"frequency_reference_population": 0.00006382934,
"hom_count_reference_population": 1,
"allele_count_reference_population": 103,
"gnomad_exomes_af": 0.0000670593,
"gnomad_genomes_af": 0.0000328334,
"gnomad_exomes_ac": 98,
"gnomad_genomes_ac": 5,
"gnomad_exomes_homalt": 1,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.2577863335609436,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.169,
"revel_prediction": "Benign",
"alphamissense_score": 0.4656,
"alphamissense_prediction": "Uncertain_significance",
"bayesdelnoaf_score": -0.55,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.57,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate,BP6_Moderate",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_000846.5",
"gene_symbol": "GSTA2",
"hgnc_id": 4627,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.56T>C",
"hgvs_p": "p.Ile19Thr"
},
{
"score": -4,
"benign_score": 4,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "ENST00000778609.1",
"gene_symbol": "ENSG00000301390",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.73-1717A>G",
"hgvs_p": null
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}