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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-57196547-A-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=57196547&ref=A&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 57196547,
"ref": "A",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000468148.6",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "NM_016277.5",
"protein_id": "NP_057361.3",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 948,
"cdna_end": null,
"cdna_length": 4830,
"mane_select": "ENST00000468148.6",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "ENST00000468148.6",
"protein_id": "ENSP00000417610.1",
"transcript_support_level": 1,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 948,
"cdna_end": null,
"cdna_length": 4830,
"mane_select": "NM_016277.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "ENST00000317483.4",
"protein_id": "ENSP00000320413.3",
"transcript_support_level": 1,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 455,
"cdna_end": null,
"cdna_length": 2546,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "NM_001278666.2",
"protein_id": "NP_001265595.1",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 479,
"cdna_end": null,
"cdna_length": 4361,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "NM_001278667.2",
"protein_id": "NP_001265596.1",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 651,
"cdna_end": null,
"cdna_length": 4533,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "NM_001278668.2",
"protein_id": "NP_001265597.1",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 486,
"cdna_end": null,
"cdna_length": 4368,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "S",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr",
"transcript": "NM_183227.3",
"protein_id": "NP_899050.1",
"transcript_support_level": null,
"aa_start": 101,
"aa_end": null,
"aa_length": 237,
"cds_start": 301,
"cds_end": null,
"cds_length": 714,
"cdna_start": 510,
"cdna_end": null,
"cdna_length": 4392,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"hgvs_c": "n.334-2613T>A",
"hgvs_p": null,
"transcript": "NR_103822.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 4035,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "RAB23",
"gene_hgnc_id": 14263,
"dbsnp": "rs45479896",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.1458391547203064,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.142,
"revel_prediction": "Benign",
"alphamissense_score": 0.0683,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.46,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 1.196,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "ENST00000468148.6",
"gene_symbol": "RAB23",
"hgnc_id": 14263,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.301T>A",
"hgvs_p": "p.Ser101Thr"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}