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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 6-75817574-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=75817574&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "6",
      "pos": 75817574,
      "ref": "G",
      "alt": "A",
      "effect": "synonymous_variant",
      "transcript": "NM_004999.4",
      "consequences": [
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_004999.4",
          "protein_id": "NP_004990.3",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8615,
          "mane_select": "ENST00000369977.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000369977.8",
          "protein_id": "ENSP00000358994.3",
          "transcript_support_level": 1,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8615,
          "mane_select": "NM_004999.4",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000615563.4",
          "protein_id": "ENSP00000478013.1",
          "transcript_support_level": 1,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": 59,
          "cdna_end": null,
          "cdna_length": 4026,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001368865.1",
          "protein_id": "NP_001355794.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1294,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3885,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8642,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 36,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000664640.1",
          "protein_id": "ENSP00000499278.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1294,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3885,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8642,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001368866.1",
          "protein_id": "NP_001355795.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8615,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000672093.1",
          "protein_id": "ENSP00000500710.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1285,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3858,
          "cdna_start": 27,
          "cdna_end": null,
          "cdna_length": 3858,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001368137.1",
          "protein_id": "NP_001355066.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1272,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3819,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8576,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001300899.2",
          "protein_id": "NP_001287828.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8546,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000369985.9",
          "protein_id": "ENSP00000359002.3",
          "transcript_support_level": 5,
          "aa_start": 9,
          "aa_end": null,
          "aa_length": 1262,
          "cds_start": 27,
          "cds_end": null,
          "cds_length": 3789,
          "cdna_start": 259,
          "cdna_end": null,
          "cdna_length": 8546,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001368138.1",
          "protein_id": "NP_001355067.1",
          "transcript_support_level": null,
          "aa_start": 9,
          "aa_end": null,
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          "cds_start": 27,
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          "cds_length": 3774,
          "cdna_start": 259,
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          "cdna_length": 8531,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "NM_001368136.1",
          "protein_id": "NP_001355065.1",
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          "mane_select": null,
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        },
        {
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          "strand": true,
          "consequences": [
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          ],
          "exon_rank": 2,
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          "intron_rank": null,
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          "gene_symbol": "MYO6",
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          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000369975.6",
          "protein_id": "ENSP00000358992.1",
          "transcript_support_level": 5,
          "aa_start": 9,
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          "cdna_start": 263,
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        },
        {
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          "protein_coding": true,
          "strand": true,
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          "exon_count": 28,
          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000627432.3",
          "protein_id": "ENSP00000487348.2",
          "transcript_support_level": 5,
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          "mane_select": null,
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        },
        {
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          ],
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          "gene_symbol": "MYO6",
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        {
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            "synonymous_variant"
          ],
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          "exon_count": 27,
          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000664209.1",
          "protein_id": "ENSP00000499768.1",
          "transcript_support_level": null,
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          "cdna_start": 353,
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          "mane_select": null,
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        {
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          "strand": true,
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          ],
          "exon_rank": 3,
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          "exon_count": 26,
          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "ENST00000653423.1",
          "protein_id": "ENSP00000499696.1",
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          "cdna_start": 305,
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          "cdna_length": 2912,
          "mane_select": null,
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        },
        {
          "aa_ref": "A",
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          "protein_coding": true,
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            "synonymous_variant"
          ],
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          "gene_symbol": "MYO6",
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          "hgvs_c": "c.27G>A",
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          "transcript": "NM_001368139.1",
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        {
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          "intron_rank": null,
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
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        },
        {
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          "protein_coding": true,
          "strand": true,
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          ],
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          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
          "transcript": "XM_024446447.2",
          "protein_id": "XP_024302215.1",
          "transcript_support_level": null,
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          "cdna_start": 159,
          "cdna_end": null,
          "cdna_length": 8542,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "A",
          "aa_alt": "A",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 35,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "MYO6",
          "gene_hgnc_id": 7605,
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala",
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      ],
      "gene_symbol": "MYO6",
      "gene_hgnc_id": 7605,
      "dbsnp": "rs767670766",
      "frequency_reference_population": 0.000021889802,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 32,
      "gnomad_exomes_af": 0.0000218898,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 32,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.6800000071525574,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.68,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -2.024,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -13,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7",
      "acmg_by_gene": [
        {
          "score": -13,
          "benign_score": 13,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7"
          ],
          "verdict": "Benign",
          "transcript": "NM_004999.4",
          "gene_symbol": "MYO6",
          "hgnc_id": 7605,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.27G>A",
          "hgvs_p": "p.Ala9Ala"
        }
      ],
      "clinvar_disease": "not provided,not specified",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2",
      "phenotype_combined": "not provided|not specified",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}