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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 6-82365143-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=82365143&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "6",
"pos": 82365143,
"ref": "A",
"alt": "G",
"effect": "missense_variant",
"transcript": "NM_006670.5",
"consequences": [
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "NM_001376922.1",
"protein_id": "NP_001363851.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000369750.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001376922.1"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000369750.4",
"protein_id": "ENSP00000358765.4",
"transcript_support_level": 1,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001376922.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000369750.4"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "NM_001166392.2",
"protein_id": "NP_001159864.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001166392.2"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "NM_006670.5",
"protein_id": "NP_006661.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_006670.5"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000535040.4",
"protein_id": "ENSP00000441219.1",
"transcript_support_level": 2,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000535040.4"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000543496.3",
"protein_id": "ENSP00000440049.1",
"transcript_support_level": 2,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000543496.3"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000885042.1",
"protein_id": "ENSP00000555101.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885042.1"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000885043.1",
"protein_id": "ENSP00000555102.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885043.1"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000885044.1",
"protein_id": "ENSP00000555103.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000885044.1"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000930942.1",
"protein_id": "ENSP00000601001.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930942.1"
},
{
"aa_ref": "Q",
"aa_alt": "R",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg",
"transcript": "ENST00000930943.1",
"protein_id": "ENSP00000601002.1",
"transcript_support_level": null,
"aa_start": 61,
"aa_end": null,
"aa_length": 420,
"cds_start": 182,
"cds_end": null,
"cds_length": 1263,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000930943.1"
}
],
"gene_symbol": "TPBG",
"gene_hgnc_id": 12004,
"dbsnp": "rs1767449620",
"frequency_reference_population": 0.0000041294275,
"hom_count_reference_population": 0,
"allele_count_reference_population": 6,
"gnomad_exomes_af": 0.00000412943,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 6,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.23614561557769775,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.144,
"revel_prediction": "Benign",
"alphamissense_score": 0.0564,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.4,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.721,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -6,
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Moderate,BS2",
"acmg_by_gene": [
{
"score": -6,
"benign_score": 6,
"pathogenic_score": 0,
"criteria": [
"BP4_Moderate",
"BS2"
],
"verdict": "Likely_benign",
"transcript": "NM_006670.5",
"gene_symbol": "TPBG",
"hgnc_id": 12004,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD",
"hgvs_c": "c.182A>G",
"hgvs_p": "p.Gln61Arg"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}