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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 6-8335142-A-G (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=6&pos=8335142&ref=A&alt=G&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "6",
      "pos": 8335142,
      "ref": "A",
      "alt": "G",
      "effect": "intron_variant",
      "transcript": "ENST00000642149.1",
      "consequences": [
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": 6,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.956+5219A>G",
          "hgvs_p": null,
          "transcript": "ENST00000439891.3",
          "protein_id": null,
          "transcript_support_level": 5,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1127,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.586-7183A>G",
          "hgvs_p": null,
          "transcript": "ENST00000642149.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1400,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.736+6865A>G",
          "hgvs_p": null,
          "transcript": "ENST00000643735.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 867,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.509-7183A>G",
          "hgvs_p": null,
          "transcript": "ENST00000643749.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1062,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.409-7183A>G",
          "hgvs_p": null,
          "transcript": "ENST00000644310.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 539,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 9,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285216",
          "gene_hgnc_id": null,
          "hgvs_c": "n.560+27582A>G",
          "hgvs_p": null,
          "transcript": "ENST00000644718.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 866,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 5,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.480-7183A>G",
          "hgvs_p": null,
          "transcript": "ENST00000647315.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 610,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.543+5219A>G",
          "hgvs_p": null,
          "transcript": "ENST00000654327.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1356,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285216",
          "gene_hgnc_id": null,
          "hgvs_c": "n.282+27582A>G",
          "hgvs_p": null,
          "transcript": "ENST00000790387.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 508,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285216",
          "gene_hgnc_id": null,
          "hgvs_c": "n.293+27582A>G",
          "hgvs_p": null,
          "transcript": "ENST00000790388.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 1377,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285216",
          "gene_hgnc_id": null,
          "hgvs_c": "n.434+27582A>G",
          "hgvs_p": null,
          "transcript": "ENST00000790389.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cdna_start": null,
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          "cdna_length": 1518,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000285216",
          "gene_hgnc_id": null,
          "hgvs_c": "n.256+27582A>G",
          "hgvs_p": null,
          "transcript": "ENST00000790390.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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        {
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          "canonical": false,
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          "strand": true,
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          "exon_count": 4,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.309-7183A>G",
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          "transcript": "ENST00000791180.1",
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        },
        {
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          "canonical": false,
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          ],
          "exon_rank": null,
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          "exon_count": 5,
          "intron_rank": 4,
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          "gene_symbol": "ENSG00000232234",
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          "hgvs_c": "n.360-7183A>G",
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          "transcript": "ENST00000791181.1",
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        },
        {
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          "canonical": false,
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          ],
          "exon_rank": null,
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          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.382-7183A>G",
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          "transcript": "ENST00000791182.1",
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        {
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          "gene_symbol": "ENSG00000232234",
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          "hgvs_c": "n.436-7183A>G",
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        },
        {
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          "strand": true,
          "consequences": [
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          ],
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          "exon_count": 5,
          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
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          "hgvs_c": "n.359+27582A>G",
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          "transcript": "ENST00000791186.1",
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        {
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          "exon_count": 4,
          "intron_rank": 3,
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          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.262-7183A>G",
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          "transcript": "ENST00000791187.1",
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          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.600-7183A>G",
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        {
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          ],
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          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
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          "transcript": "ENST00000791189.1",
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        {
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          ],
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          "intron_rank": 3,
          "intron_rank_end": null,
          "gene_symbol": "ENSG00000232234",
          "gene_hgnc_id": null,
          "hgvs_c": "n.243-7183A>G",
          "hgvs_p": null,
          "transcript": "ENST00000791195.1",
          "protein_id": null,
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        },
        {
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          "strand": true,
          "consequences": [
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          ],
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      "gnomad_exomes_af": null,
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      "computational_score_selected": -0.9100000262260437,
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      "phylop100way_prediction": "Benign",
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      "acmg_classification": "Benign",
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      "acmg_by_gene": [
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          "verdict": "Benign",
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        {
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          "verdict": "Benign",
          "transcript": "ENST00000644718.1",
          "gene_symbol": "ENSG00000285216",
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          "effects": [
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          "inheritance_mode": "",
          "hgvs_c": "n.560+27582A>G",
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      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
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  ],
  "message": null
}