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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-100057771-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=100057771&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 100057771,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_145914.3",
"consequences": [
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "NM_145914.3",
"protein_id": "NP_666019.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 637,
"cdna_end": null,
"cdna_length": 2009,
"mane_select": "ENST00000292450.9",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "ENST00000292450.9",
"protein_id": "ENSP00000292450.4",
"transcript_support_level": 1,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 637,
"cdna_end": null,
"cdna_length": 2009,
"mane_select": "NM_145914.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "NM_001362779.2",
"protein_id": "NP_001349708.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 770,
"cdna_end": null,
"cdna_length": 2142,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "NM_001362780.2",
"protein_id": "NP_001349709.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 767,
"cdna_end": null,
"cdna_length": 2139,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "NM_001362781.2",
"protein_id": "NP_001349710.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 450,
"cds_start": 473,
"cds_end": null,
"cds_length": 1353,
"cdna_start": 637,
"cdna_end": null,
"cdna_length": 1906,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "ENST00000456748.6",
"protein_id": "ENSP00000390960.2",
"transcript_support_level": 5,
"aa_start": 158,
"aa_end": null,
"aa_length": 450,
"cds_start": 473,
"cds_end": null,
"cds_length": 1353,
"cdna_start": 637,
"cdna_end": null,
"cdna_length": 1904,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "ENST00000438937.1",
"protein_id": "ENSP00000404207.1",
"transcript_support_level": 2,
"aa_start": 158,
"aa_end": null,
"aa_length": 180,
"cds_start": 473,
"cds_end": null,
"cds_length": 543,
"cdna_start": 750,
"cdna_end": null,
"cdna_length": 820,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "XM_005250568.5",
"protein_id": "XP_005250625.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 1801,
"cdna_end": null,
"cdna_length": 3173,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "XM_006716113.4",
"protein_id": "XP_006716176.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 1632,
"cdna_end": null,
"cdna_length": 3004,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "XM_047420806.1",
"protein_id": "XP_047276762.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 473,
"cds_start": 473,
"cds_end": null,
"cds_length": 1422,
"cdna_start": 1765,
"cdna_end": null,
"cdna_length": 3137,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "P",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu",
"transcript": "XM_047420807.1",
"protein_id": "XP_047276763.1",
"transcript_support_level": null,
"aa_start": 158,
"aa_end": null,
"aa_length": 450,
"cds_start": 473,
"cds_end": null,
"cds_length": 1353,
"cdna_start": 1801,
"cdna_end": null,
"cdna_length": 3070,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"hgvs_c": "n.569C>T",
"hgvs_p": null,
"transcript": "ENST00000477297.1",
"protein_id": null,
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 861,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "ZSCAN21",
"gene_hgnc_id": 13104,
"dbsnp": "rs892634369",
"frequency_reference_population": 0.0000068157965,
"hom_count_reference_population": 0,
"allele_count_reference_population": 11,
"gnomad_exomes_af": 0.00000615673,
"gnomad_genomes_af": 0.0000131506,
"gnomad_exomes_ac": 9,
"gnomad_genomes_ac": 2,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.040479570627212524,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.06,
"revel_prediction": "Benign",
"alphamissense_score": 0.0803,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.84,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -0.407,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -4,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP6_Moderate",
"acmg_by_gene": [
{
"score": -4,
"benign_score": 6,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "NM_145914.3",
"gene_symbol": "ZSCAN21",
"hgnc_id": 13104,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.473C>T",
"hgvs_p": "p.Pro158Leu"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Likely benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "LB:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Likely benign",
"custom_annotations": null
}
],
"message": null
}