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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-100113899-A-C (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=100113899&ref=A&alt=C&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "7",
      "pos": 100113899,
      "ref": "A",
      "alt": "C",
      "effect": "missense_variant",
      "transcript": "ENST00000453269.7",
      "consequences": [
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "NM_139315.3",
          "protein_id": "NP_647476.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 426,
          "cdna_end": null,
          "cdna_length": 2424,
          "mane_select": "ENST00000453269.7",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000453269.7",
          "protein_id": "ENSP00000389575.2",
          "transcript_support_level": 1,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 426,
          "cdna_end": null,
          "cdna_length": 2424,
          "mane_select": "NM_139315.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000344095.8",
          "protein_id": "ENSP00000344537.4",
          "transcript_support_level": 1,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 738,
          "cdna_end": null,
          "cdna_length": 2727,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000452041.5",
          "protein_id": "ENSP00000416396.1",
          "transcript_support_level": 1,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 307,
          "cdna_end": null,
          "cdna_length": 2297,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 14,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000472509.6",
          "protein_id": "ENSP00000419760.2",
          "transcript_support_level": 1,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 561,
          "cdna_end": null,
          "cdna_length": 2551,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.350T>G",
          "hgvs_p": "p.Ile117Ser",
          "transcript": "NM_001365004.1",
          "protein_id": "NP_001351933.1",
          "transcript_support_level": null,
          "aa_start": 117,
          "aa_end": null,
          "aa_length": 723,
          "cds_start": 350,
          "cds_end": null,
          "cds_length": 2172,
          "cdna_start": 680,
          "cdna_end": null,
          "cdna_length": 2678,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.323T>G",
          "hgvs_p": "p.Ile108Ser",
          "transcript": "NM_001190415.2",
          "protein_id": "NP_001177344.1",
          "transcript_support_level": null,
          "aa_start": 108,
          "aa_end": null,
          "aa_length": 714,
          "cds_start": 323,
          "cds_end": null,
          "cds_length": 2145,
          "cdna_start": 435,
          "cdna_end": null,
          "cdna_length": 2433,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.323T>G",
          "hgvs_p": "p.Ile108Ser",
          "transcript": "ENST00000437822.6",
          "protein_id": "ENSP00000399982.2",
          "transcript_support_level": 2,
          "aa_start": 108,
          "aa_end": null,
          "aa_length": 714,
          "cds_start": 323,
          "cds_end": null,
          "cds_length": 2145,
          "cdna_start": 418,
          "cdna_end": null,
          "cdna_length": 2318,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "NM_001364998.1",
          "protein_id": "NP_001351927.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 882,
          "cdna_end": null,
          "cdna_length": 2880,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "NM_001364999.1",
          "protein_id": "NP_001351928.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 557,
          "cdna_end": null,
          "cdna_length": 2526,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "NM_005641.4",
          "protein_id": "NP_005632.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 750,
          "cdna_end": null,
          "cdna_length": 2748,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000460673.3",
          "protein_id": "ENSP00000427710.3",
          "transcript_support_level": 4,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
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          "cds_length": 2034,
          "cdna_start": 977,
          "cdna_end": null,
          "cdna_length": 3169,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
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          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000685280.1",
          "protein_id": "ENSP00000510209.1",
          "transcript_support_level": null,
          "aa_start": 71,
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          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 402,
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          "cdna_length": 2594,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000686580.1",
          "protein_id": "ENSP00000510270.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 428,
          "cdna_end": null,
          "cdna_length": 2620,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
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          "intron_rank": null,
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          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000686777.1",
          "protein_id": "ENSP00000510166.1",
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          "cdna_start": 844,
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          "cdna_length": 3036,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000687137.1",
          "protein_id": "ENSP00000508432.1",
          "transcript_support_level": null,
          "aa_start": 71,
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          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 292,
          "cdna_end": null,
          "cdna_length": 2484,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000687410.1",
          "protein_id": "ENSP00000509158.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
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          "cds_start": 212,
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          "cds_length": 2034,
          "cdna_start": 655,
          "cdna_end": null,
          "cdna_length": 2847,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": null,
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          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000687447.1",
          "protein_id": "ENSP00000510217.1",
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          "cds_start": 212,
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        },
        {
          "aa_ref": "I",
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          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
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          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000687969.1",
          "protein_id": "ENSP00000508679.1",
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          "cdna_start": 849,
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          "cdna_length": 3041,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
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          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
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          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser",
          "transcript": "ENST00000688343.1",
          "protein_id": "ENSP00000508691.1",
          "transcript_support_level": null,
          "aa_start": 71,
          "aa_end": null,
          "aa_length": 677,
          "cds_start": 212,
          "cds_end": null,
          "cds_length": 2034,
          "cdna_start": 437,
          "cdna_end": null,
          "cdna_length": 2629,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "I",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
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          "transcript": "NR_033792.2",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 2299,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "downstream_gene_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "TAF6",
          "gene_hgnc_id": 11540,
          "hgvs_c": "n.*63T>G",
          "hgvs_p": null,
          "transcript": "ENST00000520135.6",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 781,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "TAF6",
      "gene_hgnc_id": 11540,
      "dbsnp": "rs374993554",
      "frequency_reference_population": 6.840441e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.84044e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.9433143734931946,
      "computational_prediction_selected": "Pathogenic",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.769,
      "revel_prediction": "Pathogenic",
      "alphamissense_score": 0.9449,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": 0.25,
      "bayesdelnoaf_prediction": "Pathogenic",
      "phylop100way_score": 8.424,
      "phylop100way_prediction": "Pathogenic",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": 8,
      "acmg_classification": "Likely_pathogenic",
      "acmg_criteria": "PM2,PM5,PP3_Strong",
      "acmg_by_gene": [
        {
          "score": 8,
          "benign_score": 0,
          "pathogenic_score": 8,
          "criteria": [
            "PM2",
            "PM5",
            "PP3_Strong"
          ],
          "verdict": "Likely_pathogenic",
          "transcript": "ENST00000453269.7",
          "gene_symbol": "TAF6",
          "hgnc_id": 11540,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.212T>G",
          "hgvs_p": "p.Ile71Ser"
        }
      ],
      "clinvar_disease": "",
      "clinvar_classification": "",
      "clinvar_review_status": "",
      "clinvar_submissions_summary": "",
      "phenotype_combined": null,
      "pathogenicity_classification_combined": null,
      "custom_annotations": null
    }
  ],
  "message": null
}