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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-100415779-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=100415779&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 100415779,
"ref": "G",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000684423.1",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "NM_001386010.1",
"protein_id": "NP_001372939.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 649,
"cds_start": -4,
"cds_end": null,
"cds_length": 1950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2364,
"mane_select": "ENST00000684423.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "ENST00000684423.1",
"protein_id": "ENSP00000507762.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 649,
"cds_start": -4,
"cds_end": null,
"cds_length": 1950,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2364,
"mane_select": "NM_001386010.1",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.751+196C>A",
"hgvs_p": null,
"transcript": "ENST00000398027.6",
"protein_id": "ENSP00000381109.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 648,
"cds_start": -4,
"cds_end": null,
"cds_length": 1947,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2356,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.391+196C>A",
"hgvs_p": null,
"transcript": "ENST00000490721.5",
"protein_id": "ENSP00000419187.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 477,
"cds_start": -4,
"cds_end": null,
"cds_length": 1434,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2031,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ENSG00000289690",
"gene_hgnc_id": null,
"hgvs_c": "c.-667+11945G>T",
"hgvs_p": null,
"transcript": "ENST00000695707.1",
"protein_id": "ENSP00000512107.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 220,
"cds_start": -4,
"cds_end": null,
"cds_length": 663,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2344,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "n.631+196C>A",
"hgvs_p": null,
"transcript": "ENST00000490089.1",
"protein_id": null,
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1754,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.751+196C>A",
"hgvs_p": null,
"transcript": "NM_017984.6",
"protein_id": "NP_060454.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 648,
"cds_start": -4,
"cds_end": null,
"cds_length": 1947,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2361,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "NM_001386016.1",
"protein_id": "NP_001372945.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 643,
"cds_start": -4,
"cds_end": null,
"cds_length": 1932,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2363,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "NM_001386017.1",
"protein_id": "NP_001372946.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 544,
"cds_start": -4,
"cds_end": null,
"cds_length": 1635,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2830,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "NM_001386013.1",
"protein_id": "NP_001372942.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 525,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 16,
"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
"hgvs_p": null,
"transcript": "NM_001386018.1",
"protein_id": "NP_001372947.1",
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},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 8,
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"gene_symbol": "ZCWPW1",
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"hgvs_c": "c.754+196C>A",
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"transcript": "NM_001258008.3",
"protein_id": "NP_001244937.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 16,
"intron_rank": 8,
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"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.754+196C>A",
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"transcript": "NM_001386020.1",
"protein_id": "NP_001372949.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 8,
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"gene_symbol": "ZCWPW1",
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"hgvs_c": "c.754+196C>A",
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"transcript": "ENST00000360951.8",
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},
{
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],
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"gene_symbol": "ZCWPW1",
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"hgvs_c": "c.361+3332C>A",
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"transcript": "NM_001386012.1",
"protein_id": "NP_001372941.1",
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},
{
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"strand": false,
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],
"exon_rank": null,
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"exon_count": 15,
"intron_rank": 8,
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"gene_symbol": "ZCWPW1",
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"hgvs_c": "c.754+196C>A",
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"transcript": "NM_001386022.1",
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},
{
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],
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"gene_symbol": "ZCWPW1",
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"hgvs_c": "c.550+196C>A",
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"transcript": "NM_001386023.1",
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},
{
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"consequences": [
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],
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"intron_rank": 8,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.550+196C>A",
"hgvs_p": null,
"transcript": "NM_001386009.1",
"protein_id": "NP_001372938.1",
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},
{
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"strand": false,
"consequences": [
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],
"exon_rank": null,
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"intron_rank": 8,
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"gene_symbol": "ZCWPW1",
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},
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],
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"gene_symbol": "ZCWPW1",
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},
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],
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"gene_symbol": "ZCWPW1",
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},
{
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"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 12,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.151+196C>A",
"hgvs_p": null,
"transcript": "NM_001386021.1",
"protein_id": "NP_001372950.1",
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"feature": null
},
{
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"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": 3,
"intron_rank_end": null,
"gene_symbol": "ZCWPW1",
"gene_hgnc_id": 23486,
"hgvs_c": "c.-178+196C>A",
"hgvs_p": null,
"transcript": "NM_001388066.1",
"protein_id": "NP_001374995.1",
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}