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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-101913083-C-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=101913083&ref=C&alt=G&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 101913083,
"ref": "C",
"alt": "G",
"effect": "intron_variant",
"transcript": "ENST00000292535.12",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.31-3032C>G",
"hgvs_p": null,
"transcript": "NM_181552.4",
"protein_id": "NP_853530.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1505,
"cds_start": -4,
"cds_end": null,
"cds_length": 4518,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13723,
"mane_select": "ENST00000292535.12",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.31-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000292535.12",
"protein_id": "ENSP00000292535.7",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1505,
"cds_start": -4,
"cds_end": null,
"cds_length": 4518,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13723,
"mane_select": "NM_181552.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "NM_001913.5",
"protein_id": "NP_001904.2",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 678,
"cds_start": -4,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2929,
"mane_select": null,
"mane_plus": "ENST00000622516.6",
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000622516.6",
"protein_id": "ENSP00000484760.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 678,
"cds_start": -4,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2929,
"mane_select": null,
"mane_plus": "NM_001913.5",
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000360264.7",
"protein_id": "ENSP00000353401.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 1516,
"cds_start": -4,
"cds_end": null,
"cds_length": 4551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13762,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000292538.9",
"protein_id": "ENSP00000292538.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 678,
"cds_start": -4,
"cds_end": null,
"cds_length": 2037,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2931,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000437600.9",
"protein_id": "ENSP00000414091.5",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 676,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 3026,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.64-3032C>G",
"hgvs_p": null,
"transcript": "NM_001202543.2",
"protein_id": "NP_001189472.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 1516,
"cds_start": -4,
"cds_end": null,
"cds_length": 4551,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 13766,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CUX1",
"gene_hgnc_id": 2557,
"hgvs_c": "c.31-3032C>G",
"hgvs_p": null,
"transcript": "ENST00000546411.7",
"protein_id": "ENSP00000450125.3",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 1505,
"cds_start": -4,
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"cdna_start": null,
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"mane_select": null,
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},
{
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"protein_coding": true,
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"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 1,
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"gene_symbol": "CUX1",
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"hgvs_c": "c.31-3032C>G",
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"transcript": "ENST00000549414.6",
"protein_id": "ENSP00000446630.2",
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"feature": null
},
{
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"strand": true,
"consequences": [
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],
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"intron_rank": 1,
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"gene_symbol": "CUX1",
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"hgvs_c": "c.64-3032C>G",
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"transcript": "ENST00000645010.1",
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},
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],
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},
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],
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},
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],
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},
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],
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"gene_symbol": "CUX1",
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"hgvs_c": "c.63+96990C>G",
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"transcript": "NM_001202546.3",
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},
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],
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"gene_symbol": "CUX1",
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},
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],
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"gene_symbol": "CUX1",
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