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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-103119720-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=103119720&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 103119720,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_198990.6",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001122838.3",
"protein_id": "NP_001116310.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1103,
"cdna_end": null,
"cdna_length": 5140,
"mane_select": "ENST00000465647.6",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001122838.3"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "ENST00000465647.6",
"protein_id": "ENSP00000419188.1",
"transcript_support_level": 1,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1103,
"cdna_end": null,
"cdna_length": 5140,
"mane_select": "NM_001122838.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000465647.6"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "ENST00000341533.8",
"protein_id": "ENSP00000340093.4",
"transcript_support_level": 1,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1236,
"cdna_end": null,
"cdna_length": 4972,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000341533.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "n.798A>G",
"hgvs_p": null,
"transcript": "ENST00000422589.5",
"protein_id": "ENSP00000412376.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2672,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000422589.5"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386176.1",
"protein_id": "NP_001373105.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 944,
"cdna_end": null,
"cdna_length": 4981,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386176.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386177.1",
"protein_id": "NP_001373106.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 858,
"cdna_end": null,
"cdna_length": 4895,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386177.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386179.1",
"protein_id": "NP_001373108.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 858,
"cdna_end": null,
"cdna_length": 4594,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386179.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386182.1",
"protein_id": "NP_001373111.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 991,
"cdna_end": null,
"cdna_length": 4727,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386182.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386185.1",
"protein_id": "NP_001373114.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1247,
"cdna_end": null,
"cdna_length": 5284,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386185.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386190.1",
"protein_id": "NP_001373119.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1201,
"cdna_end": null,
"cdna_length": 5238,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386190.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386191.1",
"protein_id": "NP_001373120.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1103,
"cdna_end": null,
"cdna_length": 4780,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386191.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386193.1",
"protein_id": "NP_001373122.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1247,
"cdna_end": null,
"cdna_length": 4983,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386193.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386194.1",
"protein_id": "NP_001373123.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 991,
"cdna_end": null,
"cdna_length": 5028,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386194.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386204.1",
"protein_id": "NP_001373133.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1220,
"cdna_end": null,
"cdna_length": 4897,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386204.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386208.1",
"protein_id": "NP_001373137.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1215,
"cdna_end": null,
"cdna_length": 5252,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386208.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386209.1",
"protein_id": "NP_001373138.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1315,
"cdna_end": null,
"cdna_length": 5352,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386209.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386212.1",
"protein_id": "NP_001373141.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1076,
"cdna_end": null,
"cdna_length": 5113,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386212.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_001386213.1",
"protein_id": "NP_001373142.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1093,
"cdna_end": null,
"cdna_length": 5130,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001386213.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "NM_198990.6",
"protein_id": "NP_945341.3",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1103,
"cdna_end": null,
"cdna_length": 4839,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_198990.6"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "ENST00000417955.5",
"protein_id": "ENSP00000407112.1",
"transcript_support_level": 5,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 953,
"cdna_end": null,
"cdna_length": 4988,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000417955.5"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "ENST00000427257.5",
"protein_id": "ENSP00000392775.1",
"transcript_support_level": 2,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 1096,
"cdna_end": null,
"cdna_length": 1822,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000427257.5"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "NAPEPLD",
"gene_hgnc_id": 21683,
"hgvs_c": "c.798A>G",
"hgvs_p": "p.Leu266Leu",
"transcript": "ENST00000873866.1",
"protein_id": "ENSP00000543925.1",
"transcript_support_level": null,
"aa_start": 266,
"aa_end": null,
"aa_length": 393,
"cds_start": 798,
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"phenotype_combined": "not provided",
"pathogenicity_classification_combined": "Benign",
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}
],
"message": null
}