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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-107783063-CTA-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=107783063&ref=CTA&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 107783063,
"ref": "CTA",
"alt": "C",
"effect": "frameshift_variant",
"transcript": "NM_000111.3",
"consequences": [
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "NM_000111.3",
"protein_id": "NP_000102.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1350,
"cdna_end": null,
"cdna_length": 2882,
"mane_select": "ENST00000340010.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000111.3"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000340010.10",
"protein_id": "ENSP00000345873.5",
"transcript_support_level": 1,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1350,
"cdna_end": null,
"cdna_length": 2882,
"mane_select": "NM_000111.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000340010.10"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852261.1",
"protein_id": "ENSP00000522320.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 771,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2316,
"cdna_start": 1350,
"cdna_end": null,
"cdna_length": 2903,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852261.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852262.1",
"protein_id": "ENSP00000522321.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 769,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2310,
"cdna_start": 1352,
"cdna_end": null,
"cdna_length": 2897,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852262.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852250.1",
"protein_id": "ENSP00000522309.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1314,
"cdna_end": null,
"cdna_length": 2846,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852250.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852251.1",
"protein_id": "ENSP00000522310.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1366,
"cdna_end": null,
"cdna_length": 2896,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852251.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852254.1",
"protein_id": "ENSP00000522313.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1546,
"cdna_end": null,
"cdna_length": 3078,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852254.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852257.1",
"protein_id": "ENSP00000522316.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1421,
"cdna_end": null,
"cdna_length": 2955,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852257.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852263.1",
"protein_id": "ENSP00000522322.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1372,
"cdna_end": null,
"cdna_length": 2902,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852263.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 11,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852270.1",
"protein_id": "ENSP00000522329.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 764,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2295,
"cdna_start": 1523,
"cdna_end": null,
"cdna_length": 3053,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852270.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1145_1146delTA",
"hgvs_p": "p.Ile382fs",
"transcript": "ENST00000852259.1",
"protein_id": "ENSP00000522318.1",
"transcript_support_level": null,
"aa_start": 382,
"aa_end": null,
"aa_length": 763,
"cds_start": 1145,
"cds_end": null,
"cds_length": 2292,
"cdna_start": 1347,
"cdna_end": null,
"cdna_length": 2881,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852259.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1142_1143delTA",
"hgvs_p": "p.Ile381fs",
"transcript": "ENST00000852264.1",
"protein_id": "ENSP00000522323.1",
"transcript_support_level": null,
"aa_start": 381,
"aa_end": null,
"aa_length": 762,
"cds_start": 1142,
"cds_end": null,
"cds_length": 2289,
"cdna_start": 1344,
"cdna_end": null,
"cdna_length": 2876,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852264.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852256.1",
"protein_id": "ENSP00000522315.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 758,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2277,
"cdna_start": 1352,
"cdna_end": null,
"cdna_length": 2869,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852256.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1097_1098delTA",
"hgvs_p": "p.Ile366fs",
"transcript": "ENST00000852267.1",
"protein_id": "ENSP00000522326.1",
"transcript_support_level": null,
"aa_start": 366,
"aa_end": null,
"aa_length": 747,
"cds_start": 1097,
"cds_end": null,
"cds_length": 2244,
"cdna_start": 1299,
"cdna_end": null,
"cdna_length": 2831,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852267.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1094_1095delTA",
"hgvs_p": "p.Ile365fs",
"transcript": "ENST00000852258.1",
"protein_id": "ENSP00000522317.1",
"transcript_support_level": null,
"aa_start": 365,
"aa_end": null,
"aa_length": 746,
"cds_start": 1094,
"cds_end": null,
"cds_length": 2241,
"cdna_start": 1298,
"cdna_end": null,
"cdna_length": 2830,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852258.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852269.1",
"protein_id": "ENSP00000522328.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 742,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2229,
"cdna_start": 1350,
"cdna_end": null,
"cdna_length": 2815,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852269.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852252.1",
"protein_id": "ENSP00000522311.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 732,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2199,
"cdna_start": 1352,
"cdna_end": null,
"cdna_length": 2822,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852252.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852265.1",
"protein_id": "ENSP00000522324.1",
"transcript_support_level": null,
"aa_start": 383,
"aa_end": null,
"aa_length": 732,
"cds_start": 1148,
"cds_end": null,
"cds_length": 2199,
"cdna_start": 1350,
"cdna_end": null,
"cdna_length": 2786,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852265.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1037_1038delTA",
"hgvs_p": "p.Ile346fs",
"transcript": "ENST00000852253.1",
"protein_id": "ENSP00000522312.1",
"transcript_support_level": null,
"aa_start": 346,
"aa_end": null,
"aa_length": 727,
"cds_start": 1037,
"cds_end": null,
"cds_length": 2184,
"cdna_start": 1265,
"cdna_end": null,
"cdna_length": 2797,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852253.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.995_996delTA",
"hgvs_p": "p.Ile332fs",
"transcript": "ENST00000852255.1",
"protein_id": "ENSP00000522314.1",
"transcript_support_level": null,
"aa_start": 332,
"aa_end": null,
"aa_length": 713,
"cds_start": 995,
"cds_end": null,
"cds_length": 2142,
"cdna_start": 1203,
"cdna_end": null,
"cdna_length": 2737,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852255.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.983_984delTA",
"hgvs_p": "p.Ile328fs",
"transcript": "ENST00000852271.1",
"protein_id": "ENSP00000522330.1",
"transcript_support_level": null,
"aa_start": 328,
"aa_end": null,
"aa_length": 709,
"cds_start": 983,
"cds_end": null,
"cds_length": 2130,
"cdna_start": 1187,
"cdna_end": null,
"cdna_length": 2712,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000852271.1"
},
{
"aa_ref": "I",
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"frameshift_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs",
"transcript": "ENST00000852260.1",
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{
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{
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"transcript": "ENST00000852268.1",
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{
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{
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{
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"gene_symbol": "SLC26A3",
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"biotype": "nonsense_mediated_decay",
"feature": "ENST00000379083.7"
}
],
"gene_symbol": "SLC26A3",
"gene_hgnc_id": 3018,
"dbsnp": "rs386833447",
"frequency_reference_population": 6.840535e-7,
"hom_count_reference_population": 0,
"allele_count_reference_population": 1,
"gnomad_exomes_af": 6.84053e-7,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": null,
"computational_prediction_selected": null,
"computational_source_selected": null,
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": null,
"bayesdelnoaf_prediction": null,
"phylop100way_score": 5.657,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 12,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5_Moderate",
"acmg_by_gene": [
{
"score": 12,
"benign_score": 0,
"pathogenic_score": 12,
"criteria": [
"PVS1",
"PM2",
"PP5_Moderate"
],
"verdict": "Pathogenic",
"transcript": "NM_000111.3",
"gene_symbol": "SLC26A3",
"hgnc_id": 3018,
"effects": [
"frameshift_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1148_1149delTA",
"hgvs_p": "p.Ile383fs"
}
],
"clinvar_disease": " chloride type,Congenital secretory diarrhea,not provided",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "P:1",
"phenotype_combined": "Congenital secretory diarrhea, chloride type|not provided",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}