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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-107953597-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=107953597&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "7",
      "pos": 107953597,
      "ref": "C",
      "alt": "T",
      "effect": "synonymous_variant",
      "transcript": "ENST00000222399.11",
      "consequences": [
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "NM_002291.3",
          "protein_id": "NP_002282.2",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1786,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 5361,
          "cdna_start": 3149,
          "cdna_end": null,
          "cdna_length": 5650,
          "mane_select": "ENST00000222399.11",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": true,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "ENST00000222399.11",
          "protein_id": "ENSP00000222399.6",
          "transcript_support_level": 1,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1786,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 5361,
          "cdna_start": 3149,
          "cdna_end": null,
          "cdna_length": 5650,
          "mane_select": "NM_002291.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 32,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "ENST00000677793.1",
          "protein_id": "ENSP00000504020.1",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1682,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 5049,
          "cdna_start": 3201,
          "cdna_end": null,
          "cdna_length": 5390,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 31,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "ENST00000676777.1",
          "protein_id": "ENSP00000504756.1",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1675,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 5028,
          "cdna_start": 3149,
          "cdna_end": null,
          "cdna_length": 5231,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.2601G>A",
          "hgvs_p": "p.Thr867Thr",
          "transcript": "ENST00000393561.6",
          "protein_id": "ENSP00000377191.2",
          "transcript_support_level": 5,
          "aa_start": 867,
          "aa_end": null,
          "aa_length": 1649,
          "cds_start": 2601,
          "cds_end": null,
          "cds_length": 4950,
          "cdna_start": 3117,
          "cdna_end": null,
          "cdna_length": 5618,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "ENST00000679244.1",
          "protein_id": "ENSP00000504656.1",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1188,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 3567,
          "cdna_start": 3201,
          "cdna_end": null,
          "cdna_length": 3764,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 24,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.2601G>A",
          "hgvs_p": "p.Thr867Thr",
          "transcript": "ENST00000676920.1",
          "protein_id": "ENSP00000503814.1",
          "transcript_support_level": null,
          "aa_start": 867,
          "aa_end": null,
          "aa_length": 1051,
          "cds_start": 2601,
          "cds_end": null,
          "cds_length": 3156,
          "cdna_start": 3117,
          "cdna_end": null,
          "cdna_length": 3680,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 28,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "XM_047420359.1",
          "protein_id": "XP_047276315.1",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1399,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 4200,
          "cdna_start": 3149,
          "cdna_end": null,
          "cdna_length": 4509,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "T",
          "aa_alt": "T",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "synonymous_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr",
          "transcript": "XM_047420360.1",
          "protein_id": "XP_047276316.1",
          "transcript_support_level": null,
          "aa_start": 1004,
          "aa_end": null,
          "aa_length": 1188,
          "cds_start": 3012,
          "cds_end": null,
          "cds_length": 3567,
          "cdna_start": 3149,
          "cdna_end": null,
          "cdna_length": 3717,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3012G>A",
          "hgvs_p": null,
          "transcript": "ENST00000676574.1",
          "protein_id": "ENSP00000503081.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 5818,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.*2648G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677101.1",
          "protein_id": "ENSP00000503156.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 5556,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.2780G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677144.1",
          "protein_id": "ENSP00000503049.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
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          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 5470,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.4236G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677485.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "mane_select": null,
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          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3012G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677588.1",
          "protein_id": "ENSP00000502938.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 5332,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 27,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3201G>A",
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          "transcript": "ENST00000677652.1",
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          "cdna_length": 4436,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.2601G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677801.1",
          "protein_id": "ENSP00000503438.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
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          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 5699,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3178G>A",
          "hgvs_p": null,
          "transcript": "ENST00000677994.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_start": -4,
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          "cdna_start": null,
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          "cdna_length": 3624,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3201G>A",
          "hgvs_p": null,
          "transcript": "ENST00000678232.1",
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          "cdna_length": 4865,
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        },
        {
          "aa_ref": null,
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.3154G>A",
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          "transcript": "ENST00000678266.1",
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          "cdna_start": null,
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          "feature": null
        },
        {
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          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.*2648G>A",
          "hgvs_p": null,
          "transcript": "ENST00000678346.1",
          "protein_id": "ENSP00000504349.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
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          "cdna_length": 4124,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": false,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
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          "protein_coding": false,
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          "consequences": [
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          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 33,
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          "gene_symbol": "LAMB1",
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          "hgvs_c": "n.*2648G>A",
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          "protein_id": "ENSP00000503156.1",
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        },
        {
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          "protein_coding": false,
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 25,
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          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.*2648G>A",
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          "transcript": "ENST00000678346.1",
          "protein_id": "ENSP00000504349.1",
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          "cdna_length": 4124,
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        },
        {
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          "protein_coding": false,
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          "consequences": [
            "3_prime_UTR_variant"
          ],
          "exon_rank": 22,
          "exon_rank_end": null,
          "exon_count": 34,
          "intron_rank": null,
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          "gene_symbol": "LAMB1",
          "gene_hgnc_id": 6486,
          "hgvs_c": "n.*1594G>A",
          "hgvs_p": null,
          "transcript": "ENST00000678704.1",
          "protein_id": "ENSP00000504589.1",
          "transcript_support_level": null,
          "aa_start": null,
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          "cds_end": null,
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          "cdna_length": 5706,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        }
      ],
      "gene_symbol": "LAMB1",
      "gene_hgnc_id": 6486,
      "dbsnp": "rs113725211",
      "frequency_reference_population": 0.00083757594,
      "hom_count_reference_population": 8,
      "allele_count_reference_population": 1352,
      "gnomad_exomes_af": 0.000458995,
      "gnomad_genomes_af": 0.00447161,
      "gnomad_exomes_ac": 671,
      "gnomad_genomes_ac": 681,
      "gnomad_exomes_homalt": 2,
      "gnomad_genomes_homalt": 6,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": -0.75,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "BayesDel_noAF",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": null,
      "revel_prediction": null,
      "alphamissense_score": null,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.75,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -2.918,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -21,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6_Very_Strong,BP7,BS1,BS2",
      "acmg_by_gene": [
        {
          "score": -21,
          "benign_score": 21,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6_Very_Strong",
            "BP7",
            "BS1",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000222399.11",
          "gene_symbol": "LAMB1",
          "hgnc_id": 6486,
          "effects": [
            "synonymous_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.3012G>A",
          "hgvs_p": "p.Thr1004Thr"
        }
      ],
      "clinvar_disease": "LAMB1-related disorder,not provided,not specified",
      "clinvar_classification": "Benign/Likely benign",
      "clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
      "clinvar_submissions_summary": "LB:2 B:2",
      "phenotype_combined": "not specified|not provided|LAMB1-related disorder",
      "pathogenicity_classification_combined": "Benign/Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}