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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-112296282-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=112296282&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 112296282,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_021994.3",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "NM_021994.3",
"protein_id": "NP_068834.2",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 450,
"cds_start": 436,
"cds_end": null,
"cds_length": 1353,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000361822.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_021994.3"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "ENST00000361822.8",
"protein_id": "ENSP00000354501.3",
"transcript_support_level": 1,
"aa_start": 146,
"aa_end": null,
"aa_length": 450,
"cds_start": 436,
"cds_end": null,
"cds_length": 1353,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_021994.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000361822.8"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "ENST00000450657.1",
"protein_id": "ENSP00000402292.1",
"transcript_support_level": 1,
"aa_start": 146,
"aa_end": null,
"aa_length": 290,
"cds_start": 436,
"cds_end": null,
"cds_length": 873,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000450657.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "n.*279C>T",
"hgvs_p": null,
"transcript": "ENST00000361946.8",
"protein_id": "ENSP00000355043.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000361946.8"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "n.*279C>T",
"hgvs_p": null,
"transcript": "ENST00000361946.8",
"protein_id": "ENSP00000355043.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000361946.8"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.433C>T",
"hgvs_p": "p.Leu145Phe",
"transcript": "ENST00000869148.1",
"protein_id": "ENSP00000539207.1",
"transcript_support_level": null,
"aa_start": 145,
"aa_end": null,
"aa_length": 449,
"cds_start": 433,
"cds_end": null,
"cds_length": 1350,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869148.1"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "ENST00000913151.1",
"protein_id": "ENSP00000583210.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 432,
"cds_start": 436,
"cds_end": null,
"cds_length": 1299,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000913151.1"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "ENST00000421864.3",
"protein_id": "ENSP00000415735.3",
"transcript_support_level": 3,
"aa_start": 146,
"aa_end": null,
"aa_length": 407,
"cds_start": 436,
"cds_end": null,
"cds_length": 1224,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000421864.3"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe",
"transcript": "ENST00000869149.1",
"protein_id": "ENSP00000539208.1",
"transcript_support_level": null,
"aa_start": 146,
"aa_end": null,
"aa_length": 383,
"cds_start": 436,
"cds_end": null,
"cds_length": 1152,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869149.1"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.145C>T",
"hgvs_p": "p.Leu49Phe",
"transcript": "ENST00000965706.1",
"protein_id": "ENSP00000635765.1",
"transcript_support_level": null,
"aa_start": 49,
"aa_end": null,
"aa_length": 353,
"cds_start": 145,
"cds_end": null,
"cds_length": 1062,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000965706.1"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.202C>T",
"hgvs_p": "p.Leu68Phe",
"transcript": "XM_011515768.4",
"protein_id": "XP_011514070.1",
"transcript_support_level": null,
"aa_start": 68,
"aa_end": null,
"aa_length": 372,
"cds_start": 202,
"cds_end": null,
"cds_length": 1119,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011515768.4"
},
{
"aa_ref": "L",
"aa_alt": "F",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.82C>T",
"hgvs_p": "p.Leu28Phe",
"transcript": "XM_017011720.3",
"protein_id": "XP_016867209.1",
"transcript_support_level": null,
"aa_start": 28,
"aa_end": null,
"aa_length": 332,
"cds_start": 82,
"cds_end": null,
"cds_length": 999,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017011720.3"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 2,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "c.293+9208C>T",
"hgvs_p": null,
"transcript": "ENST00000425229.5",
"protein_id": "ENSP00000390359.1",
"transcript_support_level": 3,
"aa_start": null,
"aa_end": null,
"aa_length": 198,
"cds_start": null,
"cds_end": null,
"cds_length": 598,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000425229.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "n.*23C>T",
"hgvs_p": null,
"transcript": "ENST00000457808.5",
"protein_id": "ENSP00000402846.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000457808.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"hgvs_c": "n.*23C>T",
"hgvs_p": null,
"transcript": "ENST00000457808.5",
"protein_id": "ENSP00000402846.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000457808.5"
}
],
"gene_symbol": "ZNF277",
"gene_hgnc_id": 13070,
"dbsnp": "rs969589874",
"frequency_reference_population": 0.000010057946,
"hom_count_reference_population": 0,
"allele_count_reference_population": 16,
"gnomad_exomes_af": 0.00000694841,
"gnomad_genomes_af": 0.0000395768,
"gnomad_exomes_ac": 10,
"gnomad_genomes_ac": 6,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.701264500617981,
"computational_prediction_selected": "Uncertain_significance",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.403,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.2421,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.26,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 2.47,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 0,
"pathogenic_score": 0,
"criteria": [],
"verdict": "Uncertain_significance",
"transcript": "NM_021994.3",
"gene_symbol": "ZNF277",
"hgnc_id": 13070,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.436C>T",
"hgvs_p": "p.Leu146Phe"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}