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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-123616410-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=123616410&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 4,
"criteria": [
"BP4_Strong"
],
"effects": [
"missense_variant"
],
"gene_symbol": "ASB15",
"hgnc_id": 19767,
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"inheritance_mode": "AR",
"pathogenic_score": 0,
"score": -4,
"transcript": "NM_080928.4",
"verdict": "Likely_benign"
},
{
"benign_score": 4,
"criteria": [
"BP4_Strong"
],
"effects": [
"intron_variant"
],
"gene_symbol": "ASB15-AS1",
"hgnc_id": 40904,
"hgvs_c": "n.40+8133C>T",
"hgvs_p": null,
"inheritance_mode": "",
"pathogenic_score": 0,
"score": -4,
"transcript": "ENST00000422401.1",
"verdict": "Likely_benign"
}
],
"acmg_classification": "Likely_benign",
"acmg_criteria": "BP4_Strong",
"acmg_score": -4,
"allele_count_reference_population": 536,
"alphamissense_prediction": null,
"alphamissense_score": 0.1895,
"alt": "A",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.56,
"chr": "7",
"clinvar_classification": "Uncertain significance",
"clinvar_disease": "not specified",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.021614789962768555,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4605,
"cdna_start": 545,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "NM_001290258.2",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000451215.6",
"protein_coding": true,
"protein_id": "NP_001277187.1",
"strand": true,
"transcript": "NM_001290258.2",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 4605,
"cdna_start": 545,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000451215.6",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_001290258.2",
"protein_coding": true,
"protein_id": "ENSP00000416433.1",
"strand": true,
"transcript": "ENST00000451215.6",
"transcript_support_level": 2
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 240,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 765,
"cdna_start": 249,
"cds_end": null,
"cds_length": 723,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000447789.5",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000401166.1",
"strand": true,
"transcript": "ENST00000447789.5",
"transcript_support_level": 1
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 612,
"aa_ref": "M",
"aa_start": 93,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3011,
"cdna_start": 556,
"cds_end": null,
"cds_length": 1839,
"cds_start": 279,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000944024.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.279G>A",
"hgvs_p": "p.Met93Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000614083.1",
"strand": true,
"transcript": "ENST00000944024.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2760,
"cdna_start": 284,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "NM_080928.4",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_563616.3",
"strand": true,
"transcript": "NM_080928.4",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2706,
"cdna_start": 249,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000275699.4",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000275699.3",
"strand": true,
"transcript": "ENST00000275699.4",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2817,
"cdna_start": 371,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000434204.5",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000390963.1",
"strand": true,
"transcript": "ENST00000434204.5",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4788,
"cdna_start": 728,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 14,
"exon_rank": 8,
"exon_rank_end": null,
"feature": "ENST00000451558.5",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000397655.1",
"strand": true,
"transcript": "ENST00000451558.5",
"transcript_support_level": 5
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4600,
"cdna_start": 540,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000883309.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553368.1",
"strand": true,
"transcript": "ENST00000883309.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4739,
"cdna_start": 726,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000883310.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553369.1",
"strand": true,
"transcript": "ENST00000883310.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3241,
"cdna_start": 762,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000883312.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553371.1",
"strand": true,
"transcript": "ENST00000883312.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3157,
"cdna_start": 678,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883314.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553373.1",
"strand": true,
"transcript": "ENST00000883314.1",
"transcript_support_level": null
},
{
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"aa_length": 588,
"aa_ref": "M",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3192,
"cdna_start": 713,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 13,
"exon_rank": 7,
"exon_rank_end": null,
"feature": "ENST00000883315.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553374.1",
"strand": true,
"transcript": "ENST00000883315.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_length": 588,
"aa_ref": "M",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3080,
"cdna_start": 601,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883317.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553376.1",
"strand": true,
"transcript": "ENST00000883317.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2955,
"cdna_start": 476,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000883319.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553378.1",
"strand": true,
"transcript": "ENST00000883319.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2782,
"cdna_start": 303,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000883320.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553379.1",
"strand": true,
"transcript": "ENST00000883320.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_length": 588,
"aa_ref": "M",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3140,
"cdna_start": 661,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883321.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553380.1",
"strand": true,
"transcript": "ENST00000883321.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_length": 588,
"aa_ref": "M",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2584,
"cdna_start": 428,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 11,
"exon_rank": 5,
"exon_rank_end": null,
"feature": "ENST00000883324.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
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"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553383.1",
"strand": true,
"transcript": "ENST00000883324.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
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"aa_ref": "M",
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"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2414,
"cdna_start": 537,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 12,
"exon_rank": 6,
"exon_rank_end": null,
"feature": "ENST00000883325.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553384.1",
"strand": true,
"transcript": "ENST00000883325.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2941,
"cdna_start": 462,
"cds_end": null,
"cds_length": 1767,
"cds_start": 207,
"consequences": [
"missense_variant"
],
"exon_count": 10,
"exon_rank": 4,
"exon_rank_end": null,
"feature": "ENST00000883326.1",
"gene_hgnc_id": 19767,
"gene_symbol": "ASB15",
"hgvs_c": "c.207G>A",
"hgvs_p": "p.Met69Ile",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000553385.1",
"strand": true,
"transcript": "ENST00000883326.1",
"transcript_support_level": null
},
{
"aa_alt": "I",
"aa_end": null,
"aa_length": 588,
"aa_ref": "M",
"aa_start": 69,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2787,
"cdna_start": 308,
"cds_end": null,
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}