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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-148809370-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=148809370&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 148809370,
"ref": "G",
"alt": "T",
"effect": "missense_variant",
"transcript": "ENST00000320356.7",
"consequences": [
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2050C>A",
"hgvs_p": "p.Arg684Ser",
"transcript": "NM_004456.5",
"protein_id": "NP_004447.2",
"transcript_support_level": null,
"aa_start": 684,
"aa_end": null,
"aa_length": 751,
"cds_start": 2050,
"cds_end": null,
"cds_length": 2256,
"cdna_start": 2185,
"cdna_end": null,
"cdna_length": 2654,
"mane_select": "ENST00000320356.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2050C>A",
"hgvs_p": "p.Arg684Ser",
"transcript": "ENST00000320356.7",
"protein_id": "ENSP00000320147.2",
"transcript_support_level": 1,
"aa_start": 684,
"aa_end": null,
"aa_length": 751,
"cds_start": 2050,
"cds_end": null,
"cds_length": 2256,
"cdna_start": 2185,
"cdna_end": null,
"cdna_length": 2654,
"mane_select": "NM_004456.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2035C>A",
"hgvs_p": "p.Arg679Ser",
"transcript": "ENST00000460911.5",
"protein_id": "ENSP00000419711.1",
"transcript_support_level": 1,
"aa_start": 679,
"aa_end": null,
"aa_length": 746,
"cds_start": 2035,
"cds_end": null,
"cds_length": 2241,
"cdna_start": 2124,
"cdna_end": null,
"cdna_length": 2591,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.1918C>A",
"hgvs_p": "p.Arg640Ser",
"transcript": "ENST00000350995.6",
"protein_id": "ENSP00000223193.2",
"transcript_support_level": 1,
"aa_start": 640,
"aa_end": null,
"aa_length": 707,
"cds_start": 1918,
"cds_end": null,
"cds_length": 2124,
"cdna_start": 2010,
"cdna_end": null,
"cdna_length": 2477,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2035C>A",
"hgvs_p": "p.Arg679Ser",
"transcript": "NM_001203247.2",
"protein_id": "NP_001190176.1",
"transcript_support_level": null,
"aa_start": 679,
"aa_end": null,
"aa_length": 746,
"cds_start": 2035,
"cds_end": null,
"cds_length": 2241,
"cdna_start": 2170,
"cdna_end": null,
"cdna_length": 2639,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2008C>A",
"hgvs_p": "p.Arg670Ser",
"transcript": "NM_001203248.2",
"protein_id": "NP_001190177.1",
"transcript_support_level": null,
"aa_start": 670,
"aa_end": null,
"aa_length": 737,
"cds_start": 2008,
"cds_end": null,
"cds_length": 2214,
"cdna_start": 2143,
"cdna_end": null,
"cdna_length": 2612,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2008C>A",
"hgvs_p": "p.Arg670Ser",
"transcript": "ENST00000483967.5",
"protein_id": "ENSP00000419856.1",
"transcript_support_level": 2,
"aa_start": 670,
"aa_end": null,
"aa_length": 737,
"cds_start": 2008,
"cds_end": null,
"cds_length": 2214,
"cdna_start": 2139,
"cdna_end": null,
"cdna_length": 2466,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.1918C>A",
"hgvs_p": "p.Arg640Ser",
"transcript": "NM_152998.3",
"protein_id": "NP_694543.1",
"transcript_support_level": null,
"aa_start": 640,
"aa_end": null,
"aa_length": 707,
"cds_start": 1918,
"cds_end": null,
"cds_length": 2124,
"cdna_start": 2053,
"cdna_end": null,
"cdna_length": 2522,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.1882C>A",
"hgvs_p": "p.Arg628Ser",
"transcript": "NM_001203249.2",
"protein_id": "NP_001190178.1",
"transcript_support_level": null,
"aa_start": 628,
"aa_end": null,
"aa_length": 695,
"cds_start": 1882,
"cds_end": null,
"cds_length": 2088,
"cdna_start": 2178,
"cdna_end": null,
"cdna_length": 2647,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.1882C>A",
"hgvs_p": "p.Arg628Ser",
"transcript": "ENST00000476773.5",
"protein_id": "ENSP00000419050.1",
"transcript_support_level": 2,
"aa_start": 628,
"aa_end": null,
"aa_length": 695,
"cds_start": 1882,
"cds_end": null,
"cds_length": 2088,
"cdna_start": 2202,
"cdna_end": null,
"cdna_length": 2572,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.1882C>A",
"hgvs_p": "p.Arg628Ser",
"transcript": "ENST00000478654.5",
"protein_id": "ENSP00000417062.1",
"transcript_support_level": 5,
"aa_start": 628,
"aa_end": null,
"aa_length": 695,
"cds_start": 1882,
"cds_end": null,
"cds_length": 2088,
"cdna_start": 2054,
"cdna_end": null,
"cdna_length": 2522,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2074C>A",
"hgvs_p": "p.Arg692Ser",
"transcript": "XM_011515883.3",
"protein_id": "XP_011514185.1",
"transcript_support_level": null,
"aa_start": 692,
"aa_end": null,
"aa_length": 759,
"cds_start": 2074,
"cds_end": null,
"cds_length": 2280,
"cdna_start": 2218,
"cdna_end": null,
"cdna_length": 2687,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2074C>A",
"hgvs_p": "p.Arg692Ser",
"transcript": "XM_017011817.3",
"protein_id": "XP_016867306.1",
"transcript_support_level": null,
"aa_start": 692,
"aa_end": null,
"aa_length": 759,
"cds_start": 2074,
"cds_end": null,
"cds_length": 2280,
"cdna_start": 11933,
"cdna_end": null,
"cdna_length": 12402,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2074C>A",
"hgvs_p": "p.Arg692Ser",
"transcript": "XM_047419989.1",
"protein_id": "XP_047275945.1",
"transcript_support_level": null,
"aa_start": 692,
"aa_end": null,
"aa_length": 759,
"cds_start": 2074,
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"cdna_start": 2418,
"cdna_end": null,
"cdna_length": 2887,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2059C>A",
"hgvs_p": "p.Arg687Ser",
"transcript": "XM_005249962.5",
"protein_id": "XP_005250019.1",
"transcript_support_level": null,
"aa_start": 687,
"aa_end": null,
"aa_length": 754,
"cds_start": 2059,
"cds_end": null,
"cds_length": 2265,
"cdna_start": 2403,
"cdna_end": null,
"cdna_length": 2872,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2059C>A",
"hgvs_p": "p.Arg687Ser",
"transcript": "XM_047419990.1",
"protein_id": "XP_047275946.1",
"transcript_support_level": null,
"aa_start": 687,
"aa_end": null,
"aa_length": 754,
"cds_start": 2059,
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"cdna_start": 2231,
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"cdna_length": 2700,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2050C>A",
"hgvs_p": "p.Arg684Ser",
"transcript": "XM_047419991.1",
"protein_id": "XP_047275947.1",
"transcript_support_level": null,
"aa_start": 684,
"aa_end": null,
"aa_length": 751,
"cds_start": 2050,
"cds_end": null,
"cds_length": 2256,
"cdna_start": 2173,
"cdna_end": null,
"cdna_length": 2642,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2047C>A",
"hgvs_p": "p.Arg683Ser",
"transcript": "XM_011515885.3",
"protein_id": "XP_011514187.1",
"transcript_support_level": null,
"aa_start": 683,
"aa_end": null,
"aa_length": 750,
"cds_start": 2047,
"cds_end": null,
"cds_length": 2253,
"cdna_start": 11906,
"cdna_end": null,
"cdna_length": 12375,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2035C>A",
"hgvs_p": "p.Arg679Ser",
"transcript": "XM_047419992.1",
"protein_id": "XP_047275948.1",
"transcript_support_level": null,
"aa_start": 679,
"aa_end": null,
"aa_length": 746,
"cds_start": 2035,
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"cdna_start": 2151,
"cdna_end": null,
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"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2032C>A",
"hgvs_p": "p.Arg678Ser",
"transcript": "XM_005249963.5",
"protein_id": "XP_005250020.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 745,
"cds_start": 2032,
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"cdna_start": 11891,
"cdna_end": null,
"cdna_length": 12360,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2032C>A",
"hgvs_p": "p.Arg678Ser",
"transcript": "XM_047419993.1",
"protein_id": "XP_047275949.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 745,
"cds_start": 2032,
"cds_end": null,
"cds_length": 2238,
"cdna_start": 2189,
"cdna_end": null,
"cdna_length": 2658,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
"hgvs_c": "c.2032C>A",
"hgvs_p": "p.Arg678Ser",
"transcript": "XM_047419994.1",
"protein_id": "XP_047275950.1",
"transcript_support_level": null,
"aa_start": 678,
"aa_end": null,
"aa_length": 745,
"cds_start": 2032,
"cds_end": null,
"cds_length": 2238,
"cdna_start": 2268,
"cdna_end": null,
"cdna_length": 2737,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "R",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "EZH2",
"gene_hgnc_id": 3527,
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}
],
"message": null
}