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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-157366556-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=157366556&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 157366556,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_058246.4",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "NM_058246.4",
"protein_id": "NP_490647.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 397,
"cdna_end": null,
"cdna_length": 2489,
"mane_select": "ENST00000262177.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_058246.4"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000262177.9",
"protein_id": "ENSP00000262177.4",
"transcript_support_level": 1,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 397,
"cdna_end": null,
"cdna_length": 2489,
"mane_select": "NM_058246.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000262177.9"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000429029.6",
"protein_id": "ENSP00000397556.2",
"transcript_support_level": 1,
"aa_start": 77,
"aa_end": null,
"aa_length": 241,
"cds_start": 230,
"cds_end": null,
"cds_length": 726,
"cdna_start": 435,
"cdna_end": null,
"cdna_length": 1609,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000429029.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "n.230G>A",
"hgvs_p": null,
"transcript": "ENST00000459889.5",
"protein_id": "ENSP00000488263.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7992,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000459889.5"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000867739.1",
"protein_id": "ENSP00000537798.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 356,
"cds_start": 230,
"cds_end": null,
"cds_length": 1071,
"cdna_start": 397,
"cdna_end": null,
"cdna_length": 2575,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867739.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956621.1",
"protein_id": "ENSP00000626680.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 338,
"cds_start": 230,
"cds_end": null,
"cds_length": 1017,
"cdna_start": 395,
"cdna_end": null,
"cdna_length": 2520,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956621.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000634080.1",
"protein_id": "ENSP00000488740.1",
"transcript_support_level": 2,
"aa_start": 77,
"aa_end": null,
"aa_length": 334,
"cds_start": 230,
"cds_end": null,
"cds_length": 1005,
"cdna_start": 230,
"cdna_end": null,
"cdna_length": 1005,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000634080.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000867735.1",
"protein_id": "ENSP00000537794.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 515,
"cdna_end": null,
"cdna_length": 2607,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867735.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000867741.1",
"protein_id": "ENSP00000537800.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 316,
"cdna_end": null,
"cdna_length": 2409,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867741.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000867742.1",
"protein_id": "ENSP00000537801.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 454,
"cdna_end": null,
"cdna_length": 2546,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867742.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000911733.1",
"protein_id": "ENSP00000581792.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 672,
"cdna_end": null,
"cdna_length": 2762,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911733.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000911737.1",
"protein_id": "ENSP00000581796.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 411,
"cdna_end": null,
"cdna_length": 2497,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911737.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000911739.1",
"protein_id": "ENSP00000581798.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 323,
"cdna_end": null,
"cdna_length": 2411,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000911739.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956617.1",
"protein_id": "ENSP00000626676.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 799,
"cdna_end": null,
"cdna_length": 2885,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956617.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956620.1",
"protein_id": "ENSP00000626679.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 410,
"cdna_end": null,
"cdna_length": 2502,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956620.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956628.1",
"protein_id": "ENSP00000626687.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 812,
"cdna_end": null,
"cdna_length": 2904,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956628.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956629.1",
"protein_id": "ENSP00000626688.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 324,
"cdna_end": null,
"cdna_length": 2410,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956629.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956630.1",
"protein_id": "ENSP00000626689.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 766,
"cdna_end": null,
"cdna_length": 2857,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956630.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956631.1",
"protein_id": "ENSP00000626690.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 328,
"cdna_end": null,
"cdna_length": 2414,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956631.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 3,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956632.1",
"protein_id": "ENSP00000626691.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 326,
"cds_start": 230,
"cds_end": null,
"cds_length": 981,
"cdna_start": 562,
"cdna_end": null,
"cdna_length": 2648,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956632.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000867734.1",
"protein_id": "ENSP00000537793.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 325,
"cds_start": 230,
"cds_end": null,
"cds_length": 978,
"cdna_start": 407,
"cdna_end": null,
"cdna_length": 2496,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000867734.1"
},
{
"aa_ref": "G",
"aa_alt": "E",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DNAJB6",
"gene_hgnc_id": 14888,
"hgvs_c": "c.230G>A",
"hgvs_p": "p.Gly77Glu",
"transcript": "ENST00000956618.1",
"protein_id": "ENSP00000626677.1",
"transcript_support_level": null,
"aa_start": 77,
"aa_end": null,
"aa_length": 325,
"cds_start": 230,
"cds_end": null,
"cds_length": 978,
"cdna_start": 413,
"cdna_end": null,
"cdna_length": 2496,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000956618.1"
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],
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"computational_score_selected": 0.5317531228065491,
"computational_prediction_selected": "Uncertain_significance",
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"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
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"revel_prediction": "Uncertain_significance",
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"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.16,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 5.059,
"phylop100way_prediction": "Uncertain_significance",
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"acmg_score": -5,
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{
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"BS2"
],
"verdict": "Likely_benign",
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"effects": [
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],
"inheritance_mode": "AD",
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],
"clinvar_disease": "Autosomal dominant limb-girdle muscular dystrophy type 1D (DNAJB6)",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "US:2",
"phenotype_combined": "Autosomal dominant limb-girdle muscular dystrophy type 1D (DNAJB6)",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}