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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-23140775-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=23140775&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 23140775,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001031710.3",
"consequences": [
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn",
"transcript": "NM_001031710.3",
"protein_id": "NP_001026880.2",
"transcript_support_level": null,
"aa_start": 150,
"aa_end": null,
"aa_length": 586,
"cds_start": 449,
"cds_end": null,
"cds_length": 1761,
"cdna_start": 691,
"cdna_end": null,
"cdna_length": 5619,
"mane_select": "ENST00000339077.10",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001031710.3"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn",
"transcript": "ENST00000339077.10",
"protein_id": "ENSP00000343273.4",
"transcript_support_level": 1,
"aa_start": 150,
"aa_end": null,
"aa_length": 586,
"cds_start": 449,
"cds_end": null,
"cds_length": 1761,
"cdna_start": 691,
"cdna_end": null,
"cdna_length": 5619,
"mane_select": "NM_001031710.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000339077.10"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.305G>A",
"hgvs_p": "p.Ser102Asn",
"transcript": "ENST00000409689.5",
"protein_id": "ENSP00000386263.1",
"transcript_support_level": 1,
"aa_start": 102,
"aa_end": null,
"aa_length": 538,
"cds_start": 305,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 829,
"cdna_end": null,
"cdna_length": 3231,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000409689.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "n.*457G>A",
"hgvs_p": null,
"transcript": "ENST00000521082.5",
"protein_id": "ENSP00000430351.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3165,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000521082.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "n.*457G>A",
"hgvs_p": null,
"transcript": "ENST00000521082.5",
"protein_id": "ENSP00000430351.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 3165,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000521082.5"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.488G>A",
"hgvs_p": "p.Ser163Asn",
"transcript": "ENST00000895457.1",
"protein_id": "ENSP00000565516.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 599,
"cds_start": 488,
"cds_end": null,
"cds_length": 1800,
"cdna_start": 758,
"cdna_end": null,
"cdna_length": 3193,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000895457.1"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn",
"transcript": "ENST00000895458.1",
"protein_id": "ENSP00000565517.1",
"transcript_support_level": null,
"aa_start": 150,
"aa_end": null,
"aa_length": 552,
"cds_start": 449,
"cds_end": null,
"cds_length": 1659,
"cdna_start": 667,
"cdna_end": null,
"cdna_length": 3000,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000895458.1"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.305G>A",
"hgvs_p": "p.Ser102Asn",
"transcript": "NM_018846.5",
"protein_id": "NP_061334.4",
"transcript_support_level": null,
"aa_start": 102,
"aa_end": null,
"aa_length": 538,
"cds_start": 305,
"cds_end": null,
"cds_length": 1617,
"cdna_start": 463,
"cdna_end": null,
"cdna_length": 5391,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_018846.5"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn",
"transcript": "ENST00000923179.1",
"protein_id": "ENSP00000593238.1",
"transcript_support_level": null,
"aa_start": 150,
"aa_end": null,
"aa_length": 480,
"cds_start": 449,
"cds_end": null,
"cds_length": 1443,
"cdna_start": 703,
"cdna_end": null,
"cdna_length": 2820,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923179.1"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.488G>A",
"hgvs_p": "p.Ser163Asn",
"transcript": "XM_006715757.5",
"protein_id": "XP_006715820.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 338,
"cds_start": 488,
"cds_end": null,
"cds_length": 1017,
"cdna_start": 730,
"cdna_end": null,
"cdna_length": 1740,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_006715757.5"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn",
"transcript": "XM_017012440.3",
"protein_id": "XP_016867929.1",
"transcript_support_level": null,
"aa_start": 150,
"aa_end": null,
"aa_length": 325,
"cds_start": 449,
"cds_end": null,
"cds_length": 978,
"cdna_start": 691,
"cdna_end": null,
"cdna_length": 1701,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017012440.3"
},
{
"aa_ref": "S",
"aa_alt": "N",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.383G>A",
"hgvs_p": "p.Ser128Asn",
"transcript": "XM_047420615.1",
"protein_id": "XP_047276571.1",
"transcript_support_level": null,
"aa_start": 128,
"aa_end": null,
"aa_length": 303,
"cds_start": 383,
"cds_end": null,
"cds_length": 912,
"cdna_start": 594,
"cdna_end": null,
"cdna_length": 1604,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_047420615.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 5,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.482-11292G>A",
"hgvs_p": null,
"transcript": "ENST00000952765.1",
"protein_id": "ENSP00000622824.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 482,
"cds_start": null,
"cds_end": null,
"cds_length": 1449,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2694,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952765.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": 4,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.443-11292G>A",
"hgvs_p": null,
"transcript": "ENST00000923180.1",
"protein_id": "ENSP00000593239.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 469,
"cds_start": null,
"cds_end": null,
"cds_length": 1410,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2651,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000923180.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "c.121-24923G>A",
"hgvs_p": null,
"transcript": "ENST00000952766.1",
"protein_id": "ENSP00000622825.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 314,
"cds_start": null,
"cds_end": null,
"cds_length": 945,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2159,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000952766.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 4,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "n.583G>A",
"hgvs_p": null,
"transcript": "ENST00000459661.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 592,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000459661.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "n.396G>A",
"hgvs_p": null,
"transcript": "ENST00000479288.5",
"protein_id": null,
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 616,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "ENST00000479288.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"hgvs_c": "n.822G>A",
"hgvs_p": null,
"transcript": "NR_033328.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 5750,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "NR_033328.2"
}
],
"gene_symbol": "KLHL7",
"gene_hgnc_id": 15646,
"dbsnp": "rs137853112",
"frequency_reference_population": null,
"hom_count_reference_population": 0,
"allele_count_reference_population": 0,
"gnomad_exomes_af": null,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": null,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": null,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.9448893070220947,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.301,
"revel_prediction": "Uncertain_significance",
"alphamissense_score": 0.5717,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.2,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 7.17,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 17,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PM1,PM2,PP2,PP3_Strong,PP5_Very_Strong",
"acmg_by_gene": [
{
"score": 17,
"benign_score": 0,
"pathogenic_score": 17,
"criteria": [
"PM1",
"PM2",
"PP2",
"PP3_Strong",
"PP5_Very_Strong"
],
"verdict": "Pathogenic",
"transcript": "NM_001031710.3",
"gene_symbol": "KLHL7",
"hgnc_id": 15646,
"effects": [
"missense_variant"
],
"inheritance_mode": "AD,AR",
"hgvs_c": "c.449G>A",
"hgvs_p": "p.Ser150Asn"
}
],
"clinvar_disease": "Retinitis pigmentosa 42,not provided",
"clinvar_classification": "Pathogenic/Likely pathogenic",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "P:1 LP:1",
"phenotype_combined": "Retinitis pigmentosa 42|not provided",
"pathogenicity_classification_combined": "Pathogenic/Likely pathogenic",
"custom_annotations": null
}
],
"message": null
}