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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-24939736-A-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=24939736&ref=A&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 24939736,
"ref": "A",
"alt": "C",
"effect": "intron_variant",
"transcript": "NM_015550.4",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+40150T>G",
"hgvs_p": null,
"transcript": "NM_015550.4",
"protein_id": "NP_056365.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
"cds_end": null,
"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6749,
"mane_select": "ENST00000313367.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+40150T>G",
"hgvs_p": null,
"transcript": "ENST00000313367.7",
"protein_id": "ENSP00000315410.2",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
"cds_end": null,
"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6749,
"mane_select": "NM_015550.4",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+41663T>G",
"hgvs_p": null,
"transcript": "ENST00000415952.1",
"protein_id": "ENSP00000411249.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": 60,
"cds_start": -4,
"cds_end": null,
"cds_length": 183,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 568,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+40150T>G",
"hgvs_p": null,
"transcript": "XM_047420129.1",
"protein_id": "XP_047276085.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 909,
"cds_start": -4,
"cds_end": null,
"cds_length": 2730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6818,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 24,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+41794T>G",
"hgvs_p": null,
"transcript": "XM_047420131.1",
"protein_id": "XP_047276087.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 909,
"cds_start": -4,
"cds_end": null,
"cds_length": 2730,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6841,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+41794T>G",
"hgvs_p": null,
"transcript": "XM_047420134.1",
"protein_id": "XP_047276090.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
"cds_end": null,
"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6775,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+40570T>G",
"hgvs_p": null,
"transcript": "XM_047420135.1",
"protein_id": "XP_047276091.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
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"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 7999,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+39774T>G",
"hgvs_p": null,
"transcript": "XM_047420136.1",
"protein_id": "XP_047276092.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
"cds_end": null,
"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6904,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+41663T>G",
"hgvs_p": null,
"transcript": "XM_047420137.1",
"protein_id": "XP_047276093.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
"cds_end": null,
"cds_length": 2664,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 6906,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": 1,
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"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+9041T>G",
"hgvs_p": null,
"transcript": "XM_047420138.1",
"protein_id": "XP_047276094.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 887,
"cds_start": -4,
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"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"exon_count": 23,
"intron_rank": 1,
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"gene_symbol": "OSBPL3",
"gene_hgnc_id": 16370,
"hgvs_c": "c.-150+40150T>G",
"hgvs_p": null,
"transcript": "XM_047420139.1",
"protein_id": "XP_047276095.1",
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"aa_start": null,
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},
{
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"consequences": [
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],
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"gene_symbol": "OSBPL3",
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},
{
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"consequences": [
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],
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"gene_symbol": "OSBPL3",
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"hgvs_c": "c.-150+40150T>G",
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"transcript": "XM_006715681.4",
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},
{
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],
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"gene_symbol": "OSBPL3",
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},
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],
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"transcript": "XM_047420146.1",
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},
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],
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],
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"gene_symbol": "OSBPL3",
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},
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],
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"gene_symbol": "OSBPL3",
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"hgvs_c": "c.-150+9041T>G",
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"gene_symbol": "OSBPL3",
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"gene_symbol": "OSBPL3",
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},
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],
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},
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],
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"intron_rank": 1,
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"gene_symbol": "OSBPL3",
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"hgvs_c": "n.293+40150T>G",
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},
{
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"strand": false,
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],
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"intron_rank": 1,
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"gene_symbol": "OSBPL3",
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"hgvs_c": "n.293+40150T>G",
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{
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"clinvar_disease": "",
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}
],
"message": null
}