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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-34938106-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=34938106&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 34938106,
"ref": "T",
"alt": "C",
"effect": "missense_variant",
"transcript": "NM_001366673.1",
"consequences": [
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1978A>G",
"hgvs_p": "p.Ile660Val",
"transcript": "NM_001366673.1",
"protein_id": "NP_001353602.1",
"transcript_support_level": null,
"aa_start": 660,
"aa_end": null,
"aa_length": 748,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2247,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000638088.2",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001366673.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1978A>G",
"hgvs_p": "p.Ile660Val",
"transcript": "ENST00000638088.2",
"protein_id": "ENSP00000490722.1",
"transcript_support_level": 5,
"aa_start": 660,
"aa_end": null,
"aa_length": 748,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2247,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_001366673.1",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000638088.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1759A>G",
"hgvs_p": "p.Ile587Val",
"transcript": "ENST00000310974.8",
"protein_id": "ENSP00000308695.4",
"transcript_support_level": 1,
"aa_start": 587,
"aa_end": null,
"aa_length": 675,
"cds_start": 1759,
"cds_end": null,
"cds_length": 2028,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000310974.8"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 12,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.940A>G",
"hgvs_p": "p.Ile314Val",
"transcript": "ENST00000612226.2",
"protein_id": "ENSP00000478865.2",
"transcript_support_level": 1,
"aa_start": 314,
"aa_end": null,
"aa_length": 402,
"cds_start": 940,
"cds_end": null,
"cds_length": 1209,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000612226.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.2152A>G",
"hgvs_p": "p.Ile718Val",
"transcript": "ENST00000944847.1",
"protein_id": "ENSP00000614906.1",
"transcript_support_level": null,
"aa_start": 718,
"aa_end": null,
"aa_length": 806,
"cds_start": 2152,
"cds_end": null,
"cds_length": 2421,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944847.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 22,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.2071A>G",
"hgvs_p": "p.Ile691Val",
"transcript": "ENST00000944849.1",
"protein_id": "ENSP00000614908.1",
"transcript_support_level": null,
"aa_start": 691,
"aa_end": null,
"aa_length": 779,
"cds_start": 2071,
"cds_end": null,
"cds_length": 2340,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944849.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1978A>G",
"hgvs_p": "p.Ile660Val",
"transcript": "ENST00000928159.1",
"protein_id": "ENSP00000598218.1",
"transcript_support_level": null,
"aa_start": 660,
"aa_end": null,
"aa_length": 758,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2277,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000928159.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 23,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1978A>G",
"hgvs_p": "p.Ile660Val",
"transcript": "ENST00000944845.1",
"protein_id": "ENSP00000614904.1",
"transcript_support_level": null,
"aa_start": 660,
"aa_end": null,
"aa_length": 748,
"cds_start": 1978,
"cds_end": null,
"cds_length": 2247,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944845.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1858A>G",
"hgvs_p": "p.Ile620Val",
"transcript": "ENST00000944848.1",
"protein_id": "ENSP00000614907.1",
"transcript_support_level": null,
"aa_start": 620,
"aa_end": null,
"aa_length": 708,
"cds_start": 1858,
"cds_end": null,
"cds_length": 2127,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944848.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 19,
"exon_rank_end": null,
"exon_count": 20,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1786A>G",
"hgvs_p": "p.Ile596Val",
"transcript": "ENST00000944846.1",
"protein_id": "ENSP00000614905.1",
"transcript_support_level": null,
"aa_start": 596,
"aa_end": null,
"aa_length": 684,
"cds_start": 1786,
"cds_end": null,
"cds_length": 2055,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000944846.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 21,
"exon_rank_end": null,
"exon_count": 22,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1759A>G",
"hgvs_p": "p.Ile587Val",
"transcript": "NM_015283.2",
"protein_id": "NP_056098.1",
"transcript_support_level": null,
"aa_start": 587,
"aa_end": null,
"aa_length": 675,
"cds_start": 1759,
"cds_end": null,
"cds_length": 2028,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_015283.2"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1741A>G",
"hgvs_p": "p.Ile581Val",
"transcript": "ENST00000690666.1",
"protein_id": "ENSP00000508728.1",
"transcript_support_level": null,
"aa_start": 581,
"aa_end": null,
"aa_length": 669,
"cds_start": 1741,
"cds_end": null,
"cds_length": 2010,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000690666.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 17,
"exon_rank_end": null,
"exon_count": 18,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1621A>G",
"hgvs_p": "p.Ile541Val",
"transcript": "ENST00000928160.1",
"protein_id": "ENSP00000598219.1",
"transcript_support_level": null,
"aa_start": 541,
"aa_end": null,
"aa_length": 629,
"cds_start": 1621,
"cds_end": null,
"cds_length": 1890,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000928160.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1576A>G",
"hgvs_p": "p.Ile526Val",
"transcript": "ENST00000685246.1",
"protein_id": "ENSP00000509303.1",
"transcript_support_level": null,
"aa_start": 526,
"aa_end": null,
"aa_length": 614,
"cds_start": 1576,
"cds_end": null,
"cds_length": 1845,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000685246.1"
},
{
"aa_ref": "I",
"aa_alt": "V",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"missense_variant"
],
"exon_rank": 20,
"exon_rank_end": null,
"exon_count": 21,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.1891A>G",
"hgvs_p": "p.Ile631Val",
"transcript": "XM_011515246.4",
"protein_id": "XP_011513548.1",
"transcript_support_level": null,
"aa_start": 631,
"aa_end": null,
"aa_length": 719,
"cds_start": 1891,
"cds_end": null,
"cds_length": 2160,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_011515246.4"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "c.92+1170A>G",
"hgvs_p": null,
"transcript": "ENST00000428054.1",
"protein_id": "ENSP00000412745.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 82,
"cds_start": null,
"cds_end": null,
"cds_length": 249,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000428054.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "n.34A>G",
"hgvs_p": null,
"transcript": "ENST00000687726.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000687726.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "n.898A>G",
"hgvs_p": null,
"transcript": "ENST00000688296.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "retained_intron",
"feature": "ENST00000688296.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "n.*1143A>G",
"hgvs_p": null,
"transcript": "ENST00000690503.1",
"protein_id": "ENSP00000509349.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000690503.1"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 18,
"exon_rank_end": null,
"exon_count": 19,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"hgvs_c": "n.*1143A>G",
"hgvs_p": null,
"transcript": "ENST00000690503.1",
"protein_id": "ENSP00000509349.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000690503.1"
}
],
"gene_symbol": "DPY19L1",
"gene_hgnc_id": 22205,
"dbsnp": "rs1177737159",
"frequency_reference_population": 0.000001240044,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 6.84647e-7,
"gnomad_genomes_af": 0.00000656858,
"gnomad_exomes_ac": 1,
"gnomad_genomes_ac": 1,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.16062796115875244,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.087,
"revel_prediction": "Benign",
"alphamissense_score": 0.0649,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.57,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0.96,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_001366673.1",
"gene_symbol": "DPY19L1",
"hgnc_id": 22205,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.1978A>G",
"hgvs_p": "p.Ile660Val"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}