← Back to variant description
GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-44147678-C-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=44147678&ref=C&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 44147678,
"ref": "C",
"alt": "A",
"effect": "stop_gained",
"transcript": "ENST00000403799.8",
"consequences": [
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*",
"transcript": "NM_000162.5",
"protein_id": "NP_000153.1",
"transcript_support_level": null,
"aa_start": 279,
"aa_end": null,
"aa_length": 465,
"cds_start": 835,
"cds_end": null,
"cds_length": 1398,
"cdna_start": 1321,
"cdna_end": null,
"cdna_length": 2745,
"mane_select": "ENST00000403799.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*",
"transcript": "ENST00000403799.8",
"protein_id": "ENSP00000384247.3",
"transcript_support_level": 1,
"aa_start": 279,
"aa_end": null,
"aa_length": 465,
"cds_start": 835,
"cds_end": null,
"cds_length": 1398,
"cdna_start": 1321,
"cdna_end": null,
"cdna_length": 2745,
"mane_select": "NM_000162.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "n.*833G>T",
"hgvs_p": null,
"transcript": "ENST00000395796.8",
"protein_id": "ENSP00000379142.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2539,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "n.*833G>T",
"hgvs_p": null,
"transcript": "ENST00000395796.8",
"protein_id": "ENSP00000379142.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2539,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*",
"transcript": "ENST00000671824.1",
"protein_id": "ENSP00000500264.1",
"transcript_support_level": null,
"aa_start": 279,
"aa_end": null,
"aa_length": 486,
"cds_start": 835,
"cds_end": null,
"cds_length": 1461,
"cdna_start": 1321,
"cdna_end": null,
"cdna_length": 2749,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.838G>T",
"hgvs_p": "p.Glu280*",
"transcript": "NM_033507.3",
"protein_id": "NP_277042.1",
"transcript_support_level": null,
"aa_start": 280,
"aa_end": null,
"aa_length": 466,
"cds_start": 838,
"cds_end": null,
"cds_length": 1401,
"cdna_start": 1000,
"cdna_end": null,
"cdna_length": 2424,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.838G>T",
"hgvs_p": "p.Glu280*",
"transcript": "ENST00000345378.7",
"protein_id": "ENSP00000223366.2",
"transcript_support_level": 2,
"aa_start": 280,
"aa_end": null,
"aa_length": 466,
"cds_start": 838,
"cds_end": null,
"cds_length": 1401,
"cdna_start": 1000,
"cdna_end": null,
"cdna_length": 2424,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.832G>T",
"hgvs_p": "p.Glu278*",
"transcript": "NM_033508.3",
"protein_id": "NP_277043.1",
"transcript_support_level": null,
"aa_start": 278,
"aa_end": null,
"aa_length": 464,
"cds_start": 832,
"cds_end": null,
"cds_length": 1395,
"cdna_start": 1124,
"cdna_end": null,
"cdna_length": 2548,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*",
"transcript": "NM_001354800.1",
"protein_id": "NP_001341729.1",
"transcript_support_level": null,
"aa_start": 279,
"aa_end": null,
"aa_length": 456,
"cds_start": 835,
"cds_end": null,
"cds_length": 1371,
"cdna_start": 1321,
"cdna_end": null,
"cdna_length": 2879,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*",
"transcript": "ENST00000673284.1",
"protein_id": "ENSP00000499852.1",
"transcript_support_level": null,
"aa_start": 279,
"aa_end": null,
"aa_length": 456,
"cds_start": 835,
"cds_end": null,
"cds_length": 1371,
"cdna_start": 1321,
"cdna_end": null,
"cdna_length": 2879,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "E",
"aa_alt": "*",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"stop_gained"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "c.784G>T",
"hgvs_p": "p.Glu262*",
"transcript": "ENST00000437084.1",
"protein_id": "ENSP00000402840.1",
"transcript_support_level": 5,
"aa_start": 262,
"aa_end": null,
"aa_length": 448,
"cds_start": 784,
"cds_end": null,
"cds_length": 1347,
"cdna_start": 818,
"cdna_end": null,
"cdna_length": 1385,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"hgvs_c": "n.835G>T",
"hgvs_p": null,
"transcript": "ENST00000616242.5",
"protein_id": "ENSP00000482149.2",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2686,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "LOC105375258",
"gene_hgnc_id": null,
"hgvs_c": "n.28C>A",
"hgvs_p": null,
"transcript": "XR_927223.3",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 467,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000300758",
"gene_hgnc_id": null,
"hgvs_c": "n.174+1931C>A",
"hgvs_p": null,
"transcript": "ENST00000773856.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1210,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ENSG00000300758",
"gene_hgnc_id": null,
"hgvs_c": "n.173+1931C>A",
"hgvs_p": null,
"transcript": "ENST00000773857.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1381,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "GCK",
"gene_hgnc_id": 4195,
"dbsnp": "rs104894005",
"frequency_reference_population": 0.0000013714542,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000137145,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.6299999952316284,
"computational_prediction_selected": "Pathogenic",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0.09000000357627869,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": 0.63,
"bayesdelnoaf_prediction": "Pathogenic",
"phylop100way_score": 4.98,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.09,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 11,
"acmg_classification": "Pathogenic",
"acmg_criteria": "PVS1,PM2,PP5",
"acmg_by_gene": [
{
"score": 11,
"benign_score": 0,
"pathogenic_score": 11,
"criteria": [
"PVS1",
"PM2",
"PP5"
],
"verdict": "Pathogenic",
"transcript": "ENST00000403799.8",
"gene_symbol": "GCK",
"hgnc_id": 4195,
"effects": [
"stop_gained"
],
"inheritance_mode": "AR,AD",
"hgvs_c": "c.835G>T",
"hgvs_p": "p.Glu279*"
},
{
"score": 7,
"benign_score": 0,
"pathogenic_score": 7,
"criteria": [
"PM2",
"PP3_Strong",
"PP5"
],
"verdict": "Likely_pathogenic",
"transcript": "XR_927223.3",
"gene_symbol": "LOC105375258",
"hgnc_id": null,
"effects": [
"non_coding_transcript_exon_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.28C>A",
"hgvs_p": null
},
{
"score": 7,
"benign_score": 0,
"pathogenic_score": 7,
"criteria": [
"PM2",
"PP3_Strong",
"PP5"
],
"verdict": "Likely_pathogenic",
"transcript": "ENST00000773856.1",
"gene_symbol": "ENSG00000300758",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.174+1931C>A",
"hgvs_p": null
}
],
"clinvar_disease": "Maturity-onset diabetes of the young type 2",
"clinvar_classification": "Pathogenic",
"clinvar_review_status": "no assertion criteria provided",
"clinvar_submissions_summary": "null",
"phenotype_combined": "Maturity-onset diabetes of the young type 2",
"pathogenicity_classification_combined": "Pathogenic",
"custom_annotations": null
}
],
"message": null
}