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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-5905242-C-T (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=5905242&ref=C&alt=T&genome=hg38&allGenes=true"

API Response

json
{
  "message": null,
  "variants": [
    {
      "acmg_by_gene": [
        {
          "benign_score": 0,
          "criteria": [
            "PM2"
          ],
          "effects": [
            "missense_variant"
          ],
          "gene_symbol": "CCZ1",
          "hgnc_id": 21691,
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "inheritance_mode": "",
          "pathogenic_score": 2,
          "score": 2,
          "transcript": "NM_015622.6",
          "verdict": "Uncertain_significance"
        }
      ],
      "acmg_classification": "Uncertain_significance",
      "acmg_criteria": "PM2",
      "acmg_score": 2,
      "allele_count_reference_population": 0,
      "alphamissense_prediction": "Benign",
      "alphamissense_score": 0.2209,
      "alt": "T",
      "apogee2_prediction": null,
      "apogee2_score": null,
      "bayesdelnoaf_prediction": "Uncertain_significance",
      "bayesdelnoaf_score": 0.1,
      "chr": "7",
      "clinvar_classification": "Uncertain significance",
      "clinvar_disease": "not specified",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "computational_prediction_selected": "Uncertain_significance",
      "computational_score_selected": 0.44658565521240234,
      "computational_source_selected": "MetaRNN",
      "consequences": [
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 482,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 2379,
          "cdna_start": 738,
          "cds_end": null,
          "cds_length": 1449,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "NM_015622.6",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "ENST00000325974.9",
          "protein_coding": true,
          "protein_id": "NP_056437.4",
          "strand": true,
          "transcript": "NM_015622.6",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 482,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": true,
          "cdna_end": null,
          "cdna_length": 2379,
          "cdna_start": 738,
          "cds_end": null,
          "cds_length": 1449,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000325974.9",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": "NM_015622.6",
          "protein_coding": true,
          "protein_id": "ENSP00000325681.6",
          "strand": true,
          "transcript": "ENST00000325974.9",
          "transcript_support_level": 1
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 512,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1892,
          "cdna_start": 737,
          "cds_end": null,
          "cds_length": 1539,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928077.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598136.1",
          "strand": true,
          "transcript": "ENST00000928077.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 487,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1828,
          "cdna_start": 748,
          "cds_end": null,
          "cds_length": 1464,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928076.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598135.1",
          "strand": true,
          "transcript": "ENST00000928076.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 481,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1802,
          "cdna_start": 737,
          "cds_end": null,
          "cds_length": 1446,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000887570.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000557629.1",
          "strand": true,
          "transcript": "ENST00000887570.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 481,
          "aa_ref": "A",
          "aa_start": 223,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1834,
          "cdna_start": 766,
          "cds_end": null,
          "cds_length": 1446,
          "cds_start": 668,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928073.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.668C>T",
          "hgvs_p": "p.Ala223Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598132.1",
          "strand": true,
          "transcript": "ENST00000928073.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 481,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1780,
          "cdna_start": 718,
          "cds_end": null,
          "cds_length": 1446,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928078.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598137.1",
          "strand": true,
          "transcript": "ENST00000928078.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 479,
          "aa_ref": "A",
          "aa_start": 221,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1742,
          "cdna_start": 677,
          "cds_end": null,
          "cds_length": 1440,
          "cds_start": 662,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928082.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.662C>T",
          "hgvs_p": "p.Ala221Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598141.1",
          "strand": true,
          "transcript": "ENST00000928082.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 472,
          "aa_ref": "A",
          "aa_start": 214,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1734,
          "cdna_start": 669,
          "cds_end": null,
          "cds_length": 1419,
          "cds_start": 641,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 15,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928080.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.641C>T",
          "hgvs_p": "p.Ala214Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598139.1",
          "strand": true,
          "transcript": "ENST00000928080.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 466,
          "aa_ref": "A",
          "aa_start": 208,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1718,
          "cdna_start": 653,
          "cds_end": null,
          "cds_length": 1401,
          "cds_start": 623,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 6,
          "exon_rank_end": null,
          "feature": "ENST00000928079.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.623C>T",
          "hgvs_p": "p.Ala208Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598138.1",
          "strand": true,
          "transcript": "ENST00000928079.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 444,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1720,
          "cdna_start": 769,
          "cds_end": null,
          "cds_length": 1335,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 14,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000928075.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598134.1",
          "strand": true,
          "transcript": "ENST00000928075.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 424,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1670,
          "cdna_start": 779,
          "cds_end": null,
          "cds_length": 1275,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000887568.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000557627.1",
          "strand": true,
          "transcript": "ENST00000887568.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 423,
          "aa_ref": "A",
          "aa_start": 223,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1590,
          "cdna_start": 699,
          "cds_end": null,
          "cds_length": 1272,
          "cds_start": 668,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000887573.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.668C>T",
          "hgvs_p": "p.Ala223Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000557632.1",
          "strand": true,
          "transcript": "ENST00000887573.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 423,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1575,
          "cdna_start": 691,
          "cds_end": null,
          "cds_length": 1272,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000971175.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000641234.1",
          "strand": true,
          "transcript": "ENST00000971175.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 418,
          "aa_ref": "A",
          "aa_start": 160,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1568,
          "cdna_start": 503,
          "cds_end": null,
          "cds_length": 1257,
          "cds_start": 479,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 13,
          "exon_rank": 5,
          "exon_rank_end": null,
          "feature": "ENST00000928081.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.479C>T",
          "hgvs_p": "p.Ala160Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598140.1",
          "strand": true,
          "transcript": "ENST00000928081.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 394,
          "aa_ref": "A",
          "aa_start": 224,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1535,
          "cdna_start": 738,
          "cds_end": null,
          "cds_length": 1185,
          "cds_start": 671,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 7,
          "exon_rank_end": null,
          "feature": "ENST00000887571.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.671C>T",
          "hgvs_p": "p.Ala224Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000557630.1",
          "strand": true,
          "transcript": "ENST00000887571.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 392,
          "aa_ref": "A",
          "aa_start": 134,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1565,
          "cdna_start": 500,
          "cds_end": null,
          "cds_length": 1179,
          "cds_start": 401,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 12,
          "exon_rank": 4,
          "exon_rank_end": null,
          "feature": "ENST00000887569.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.401C>T",
          "hgvs_p": "p.Ala134Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000557628.1",
          "strand": true,
          "transcript": "ENST00000887569.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 376,
          "aa_ref": "A",
          "aa_start": 118,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1516,
          "cdna_start": 451,
          "cds_end": null,
          "cds_length": 1131,
          "cds_start": 353,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 11,
          "exon_rank": 3,
          "exon_rank_end": null,
          "feature": "ENST00000928074.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.353C>T",
          "hgvs_p": "p.Ala118Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598133.1",
          "strand": true,
          "transcript": "ENST00000928074.1",
          "transcript_support_level": null
        },
        {
          "aa_alt": "V",
          "aa_end": null,
          "aa_length": 348,
          "aa_ref": "A",
          "aa_start": 90,
          "biotype": "protein_coding",
          "canonical": false,
          "cdna_end": null,
          "cdna_length": 1338,
          "cdna_start": 273,
          "cds_end": null,
          "cds_length": 1047,
          "cds_start": 269,
          "consequences": [
            "missense_variant"
          ],
          "exon_count": 10,
          "exon_rank": 2,
          "exon_rank_end": null,
          "feature": "ENST00000928083.1",
          "gene_hgnc_id": 21691,
          "gene_symbol": "CCZ1",
          "hgvs_c": "c.269C>T",
          "hgvs_p": "p.Ala90Val",
          "intron_rank": null,
          "intron_rank_end": null,
          "mane_plus": null,
          "mane_select": null,
          "protein_coding": true,
          "protein_id": "ENSP00000598142.1",
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}
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.