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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-73834863-G-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=73834863&ref=G&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 73834863,
"ref": "G",
"alt": "T",
"effect": "synonymous_variant",
"transcript": "NM_152559.3",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.618C>A",
"hgvs_p": "p.Thr206Thr",
"transcript": "NM_152559.3",
"protein_id": "NP_689772.2",
"transcript_support_level": null,
"aa_start": 206,
"aa_end": null,
"aa_length": 245,
"cds_start": 618,
"cds_end": null,
"cds_length": 738,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000297873.9",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_152559.3"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.618C>A",
"hgvs_p": "p.Thr206Thr",
"transcript": "ENST00000297873.9",
"protein_id": "ENSP00000297873.4",
"transcript_support_level": 1,
"aa_start": 206,
"aa_end": null,
"aa_length": 245,
"cds_start": 618,
"cds_end": null,
"cds_length": 738,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_152559.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000297873.9"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.696C>A",
"hgvs_p": "p.Thr232Thr",
"transcript": "ENST00000866837.1",
"protein_id": "ENSP00000536896.1",
"transcript_support_level": null,
"aa_start": 232,
"aa_end": null,
"aa_length": 271,
"cds_start": 696,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866837.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.618C>A",
"hgvs_p": "p.Thr206Thr",
"transcript": "ENST00000866839.1",
"protein_id": "ENSP00000536898.1",
"transcript_support_level": null,
"aa_start": 206,
"aa_end": null,
"aa_length": 245,
"cds_start": 618,
"cds_end": null,
"cds_length": 738,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866839.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.570C>A",
"hgvs_p": "p.Thr190Thr",
"transcript": "ENST00000866838.1",
"protein_id": "ENSP00000536897.1",
"transcript_support_level": null,
"aa_start": 190,
"aa_end": null,
"aa_length": 229,
"cds_start": 570,
"cds_end": null,
"cds_length": 690,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000866838.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.528C>A",
"hgvs_p": "p.Thr176Thr",
"transcript": "ENST00000959569.1",
"protein_id": "ENSP00000629628.1",
"transcript_support_level": null,
"aa_start": 176,
"aa_end": null,
"aa_length": 215,
"cds_start": 528,
"cds_end": null,
"cds_length": 648,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000959569.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 5,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.489C>A",
"hgvs_p": "p.Thr163Thr",
"transcript": "ENST00000920429.1",
"protein_id": "ENSP00000590488.1",
"transcript_support_level": null,
"aa_start": 163,
"aa_end": null,
"aa_length": 202,
"cds_start": 489,
"cds_end": null,
"cds_length": 609,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000920429.1"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.696C>A",
"hgvs_p": "p.Thr232Thr",
"transcript": "XM_017011777.2",
"protein_id": "XP_016867266.1",
"transcript_support_level": null,
"aa_start": 232,
"aa_end": null,
"aa_length": 271,
"cds_start": 696,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017011777.2"
},
{
"aa_ref": "T",
"aa_alt": "T",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 6,
"exon_rank_end": null,
"exon_count": 6,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "c.696C>A",
"hgvs_p": "p.Thr232Thr",
"transcript": "XM_017011778.2",
"protein_id": "XP_016867267.1",
"transcript_support_level": null,
"aa_start": 232,
"aa_end": null,
"aa_length": 271,
"cds_start": 696,
"cds_end": null,
"cds_length": 816,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "XM_017011778.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "n.827C>A",
"hgvs_p": null,
"transcript": "XR_001744563.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "pseudogene",
"feature": "XR_001744563.2"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"downstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"hgvs_c": "n.*287C>A",
"hgvs_p": null,
"transcript": "ENST00000458679.5",
"protein_id": "ENSP00000398533.1",
"transcript_support_level": 4,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000458679.5"
}
],
"gene_symbol": "METTL27",
"gene_hgnc_id": 19068,
"dbsnp": "rs141574320",
"frequency_reference_population": 0.0000013703886,
"hom_count_reference_population": 0,
"allele_count_reference_population": 2,
"gnomad_exomes_af": 0.00000137039,
"gnomad_genomes_af": null,
"gnomad_exomes_ac": 2,
"gnomad_genomes_ac": null,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": null,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5699999928474426,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": null,
"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.57,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 0,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": -3,
"acmg_classification": "Likely_benign",
"acmg_criteria": "PM2,BP4_Strong,BP7",
"acmg_by_gene": [
{
"score": -3,
"benign_score": 5,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Strong",
"BP7"
],
"verdict": "Likely_benign",
"transcript": "NM_152559.3",
"gene_symbol": "METTL27",
"hgnc_id": 19068,
"effects": [
"synonymous_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.618C>A",
"hgvs_p": "p.Thr206Thr"
}
],
"clinvar_disease": "",
"clinvar_classification": "",
"clinvar_review_status": "",
"clinvar_submissions_summary": "",
"phenotype_combined": null,
"pathogenicity_classification_combined": null,
"custom_annotations": null
}
],
"message": null
}