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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-74063194-G-A (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=74063194&ref=G&alt=A&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 74063194,
"ref": "G",
"alt": "A",
"effect": "missense_variant",
"transcript": "NM_001278939.2",
"consequences": [
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1828G>A",
"hgvs_p": "p.Gly610Ser",
"transcript": "NM_000501.4",
"protein_id": "NP_000492.2",
"transcript_support_level": null,
"aa_start": 610,
"aa_end": null,
"aa_length": 724,
"cds_start": 1828,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000252034.12",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000501.4"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1828G>A",
"hgvs_p": "p.Gly610Ser",
"transcript": "ENST00000252034.12",
"protein_id": "ENSP00000252034.7",
"transcript_support_level": 1,
"aa_start": 610,
"aa_end": null,
"aa_length": 724,
"cds_start": 1828,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000501.4",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000252034.12"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1846G>A",
"hgvs_p": "p.Gly616Ser",
"transcript": "ENST00000380562.8",
"protein_id": "ENSP00000369936.4",
"transcript_support_level": 1,
"aa_start": 616,
"aa_end": null,
"aa_length": 730,
"cds_start": 1846,
"cds_end": null,
"cds_length": 2193,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380562.8"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1798G>A",
"hgvs_p": "p.Gly600Ser",
"transcript": "ENST00000458204.5",
"protein_id": "ENSP00000403162.1",
"transcript_support_level": 1,
"aa_start": 600,
"aa_end": null,
"aa_length": 714,
"cds_start": 1798,
"cds_end": null,
"cds_length": 2145,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000458204.5"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1843G>A",
"hgvs_p": "p.Gly615Ser",
"transcript": "ENST00000357036.9",
"protein_id": "ENSP00000349540.5",
"transcript_support_level": 1,
"aa_start": 615,
"aa_end": null,
"aa_length": 711,
"cds_start": 1843,
"cds_end": null,
"cds_length": 2136,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000357036.9"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1771G>A",
"hgvs_p": "p.Gly591Ser",
"transcript": "ENST00000380576.9",
"protein_id": "ENSP00000369950.5",
"transcript_support_level": 1,
"aa_start": 591,
"aa_end": null,
"aa_length": 705,
"cds_start": 1771,
"cds_end": null,
"cds_length": 2118,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380576.9"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 25,
"exon_rank_end": null,
"exon_count": 30,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1741G>A",
"hgvs_p": "p.Gly581Ser",
"transcript": "ENST00000380575.8",
"protein_id": "ENSP00000369949.4",
"transcript_support_level": 1,
"aa_start": 581,
"aa_end": null,
"aa_length": 677,
"cds_start": 1741,
"cds_end": null,
"cds_length": 2034,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380575.8"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 24,
"exon_rank_end": null,
"exon_count": 29,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1684G>A",
"hgvs_p": "p.Gly562Ser",
"transcript": "ENST00000380584.8",
"protein_id": "ENSP00000369958.4",
"transcript_support_level": 1,
"aa_start": 562,
"aa_end": null,
"aa_length": 658,
"cds_start": 1684,
"cds_end": null,
"cds_length": 1977,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000380584.8"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.2014G>A",
"hgvs_p": "p.Gly672Ser",
"transcript": "NM_001278939.2",
"protein_id": "NP_001265868.1",
"transcript_support_level": null,
"aa_start": 672,
"aa_end": null,
"aa_length": 786,
"cds_start": 2014,
"cds_end": null,
"cds_length": 2361,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278939.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.2014G>A",
"hgvs_p": "p.Gly672Ser",
"transcript": "ENST00000692049.1",
"protein_id": "ENSP00000510104.1",
"transcript_support_level": null,
"aa_start": 672,
"aa_end": null,
"aa_length": 786,
"cds_start": 2014,
"cds_end": null,
"cds_length": 2361,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000692049.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1927G>A",
"hgvs_p": "p.Gly643Ser",
"transcript": "ENST00000320399.10",
"protein_id": "ENSP00000313565.6",
"transcript_support_level": 5,
"aa_start": 643,
"aa_end": null,
"aa_length": 757,
"cds_start": 1927,
"cds_end": null,
"cds_length": 2274,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000320399.10"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 34,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1906G>A",
"hgvs_p": "p.Gly636Ser",
"transcript": "ENST00000953888.1",
"protein_id": "ENSP00000623947.1",
"transcript_support_level": null,
"aa_start": 636,
"aa_end": null,
"aa_length": 750,
"cds_start": 1906,
"cds_end": null,
"cds_length": 2253,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953888.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1846G>A",
"hgvs_p": "p.Gly616Ser",
"transcript": "NM_001278915.2",
"protein_id": "NP_001265844.1",
"transcript_support_level": null,
"aa_start": 616,
"aa_end": null,
"aa_length": 730,
"cds_start": 1846,
"cds_end": null,
"cds_length": 2193,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001278915.2"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1843G>A",
"hgvs_p": "p.Gly615Ser",
"transcript": "ENST00000869821.1",
"protein_id": "ENSP00000539880.1",
"transcript_support_level": null,
"aa_start": 615,
"aa_end": null,
"aa_length": 729,
"cds_start": 1843,
"cds_end": null,
"cds_length": 2190,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869821.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 31,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1885G>A",
"hgvs_p": "p.Gly629Ser",
"transcript": "ENST00000953850.1",
"protein_id": "ENSP00000623909.1",
"transcript_support_level": null,
"aa_start": 629,
"aa_end": null,
"aa_length": 725,
"cds_start": 1885,
"cds_end": null,
"cds_length": 2178,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953850.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 28,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1882G>A",
"hgvs_p": "p.Gly628Ser",
"transcript": "ENST00000869853.1",
"protein_id": "ENSP00000539912.1",
"transcript_support_level": null,
"aa_start": 628,
"aa_end": null,
"aa_length": 724,
"cds_start": 1882,
"cds_end": null,
"cds_length": 2175,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869853.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1825G>A",
"hgvs_p": "p.Gly609Ser",
"transcript": "ENST00000869840.1",
"protein_id": "ENSP00000539899.1",
"transcript_support_level": null,
"aa_start": 609,
"aa_end": null,
"aa_length": 723,
"cds_start": 1825,
"cds_end": null,
"cds_length": 2172,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869840.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1822G>A",
"hgvs_p": "p.Gly608Ser",
"transcript": "ENST00000869804.1",
"protein_id": "ENSP00000539863.1",
"transcript_support_level": null,
"aa_start": 608,
"aa_end": null,
"aa_length": 722,
"cds_start": 1822,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869804.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1822G>A",
"hgvs_p": "p.Gly608Ser",
"transcript": "ENST00000953875.1",
"protein_id": "ENSP00000623934.1",
"transcript_support_level": null,
"aa_start": 608,
"aa_end": null,
"aa_length": 722,
"cds_start": 1822,
"cds_end": null,
"cds_length": 2169,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953875.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1828G>A",
"hgvs_p": "p.Gly610Ser",
"transcript": "ENST00000953869.1",
"protein_id": "ENSP00000623928.1",
"transcript_support_level": null,
"aa_start": 610,
"aa_end": null,
"aa_length": 720,
"cds_start": 1828,
"cds_end": null,
"cds_length": 2163,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000953869.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 27,
"exon_rank_end": null,
"exon_count": 33,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1804G>A",
"hgvs_p": "p.Gly602Ser",
"transcript": "ENST00000869842.1",
"protein_id": "ENSP00000539901.1",
"transcript_support_level": null,
"aa_start": 602,
"aa_end": null,
"aa_length": 716,
"cds_start": 1804,
"cds_end": null,
"cds_length": 2151,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000869842.1"
},
{
"aa_ref": "G",
"aa_alt": "S",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 26,
"exon_rank_end": null,
"exon_count": 32,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ELN",
"gene_hgnc_id": 3327,
"hgvs_c": "c.1801G>A",
"hgvs_p": "p.Gly601Ser",
"transcript": "ENST00000953881.1",
"protein_id": "ENSP00000623940.1",
"transcript_support_level": null,
"aa_start": 601,
"aa_end": null,
"aa_length": 715,
"cds_start": 1801,
"cds_end": null,
"cds_length": 2148,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
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],
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"dbsnp": "rs140425210",
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"hom_count_reference_population": 3,
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"gnomad_mito_homoplasmic": null,
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"computational_score_selected": 0.009562253952026367,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.104,
"revel_prediction": "Benign",
"alphamissense_score": 0.2201,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.25,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": 4.918,
"phylop100way_prediction": "Uncertain_significance",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
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"apogee2_score": null,
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"mitotip_score": null,
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"acmg_score": -20,
"acmg_classification": "Benign",
"acmg_criteria": "BP4_Strong,BP6_Very_Strong,BS1,BS2",
"acmg_by_gene": [
{
"score": -20,
"benign_score": 20,
"pathogenic_score": 0,
"criteria": [
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"BP6_Very_Strong",
"BS1",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_001278939.2",
"gene_symbol": "ELN",
"hgnc_id": 3327,
"effects": [
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],
"inheritance_mode": "AD",
"hgvs_c": "c.2014G>A",
"hgvs_p": "p.Gly672Ser"
}
],
"clinvar_disease": " autosomal dominant 1,Cutis laxa,Supravalvar aortic stenosis,not provided,not specified",
"clinvar_classification": "Benign/Likely benign",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "LB:3 B:3",
"phenotype_combined": "not specified|not provided|Cutis laxa, autosomal dominant 1|Supravalvar aortic stenosis",
"pathogenicity_classification_combined": "Benign/Likely benign",
"custom_annotations": null
}
],
"message": null
}