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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-77585562-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=77585562&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "7",
      "pos": 77585562,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_002835.4",
      "consequences": [
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.401G>A",
          "hgvs_p": "p.Arg134Gln",
          "transcript": "NM_002835.4",
          "protein_id": "NP_002826.3",
          "transcript_support_level": null,
          "aa_start": 134,
          "aa_end": null,
          "aa_length": 780,
          "cds_start": 401,
          "cds_end": null,
          "cds_length": 2343,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "ENST00000248594.11",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_002835.4"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.401G>A",
          "hgvs_p": "p.Arg134Gln",
          "transcript": "ENST00000248594.11",
          "protein_id": "ENSP00000248594.6",
          "transcript_support_level": 1,
          "aa_start": 134,
          "aa_end": null,
          "aa_length": 780,
          "cds_start": 401,
          "cds_end": null,
          "cds_length": 2343,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": "NM_002835.4",
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000248594.11"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 3,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "ENST00000440186.5",
          "protein_id": "ENSP00000413449.1",
          "transcript_support_level": 1,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 16,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 53,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000440186.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.401G>A",
          "hgvs_p": "p.Arg134Gln",
          "transcript": "ENST00000962769.1",
          "protein_id": "ENSP00000632828.1",
          "transcript_support_level": null,
          "aa_start": 134,
          "aa_end": null,
          "aa_length": 779,
          "cds_start": 401,
          "cds_end": null,
          "cds_length": 2340,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000962769.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.401G>A",
          "hgvs_p": "p.Arg134Gln",
          "transcript": "ENST00000928330.1",
          "protein_id": "ENSP00000598389.1",
          "transcript_support_level": null,
          "aa_start": 134,
          "aa_end": null,
          "aa_length": 721,
          "cds_start": 401,
          "cds_end": null,
          "cds_length": 2166,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000928330.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "NM_001131008.2",
          "protein_id": "NP_001124480.1",
          "transcript_support_level": null,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001131008.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "ENST00000415482.6",
          "protein_id": "ENSP00000392429.2",
          "transcript_support_level": 5,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000415482.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.11G>A",
          "hgvs_p": "p.Arg4Gln",
          "transcript": "NM_001131009.2",
          "protein_id": "NP_001124481.1",
          "transcript_support_level": null,
          "aa_start": 4,
          "aa_end": null,
          "aa_length": 650,
          "cds_start": 11,
          "cds_end": null,
          "cds_length": 1953,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "NM_001131009.2"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.11G>A",
          "hgvs_p": "p.Arg4Gln",
          "transcript": "ENST00000435495.6",
          "protein_id": "ENSP00000397991.2",
          "transcript_support_level": 2,
          "aa_start": 4,
          "aa_end": null,
          "aa_length": 650,
          "cds_start": 11,
          "cds_end": null,
          "cds_length": 1953,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000435495.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.287G>A",
          "hgvs_p": "p.Arg96Gln",
          "transcript": "ENST00000522115.6",
          "protein_id": "ENSP00000430726.2",
          "transcript_support_level": 5,
          "aa_start": 96,
          "aa_end": null,
          "aa_length": 212,
          "cds_start": 287,
          "cds_end": null,
          "cds_length": 640,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000522115.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "ENST00000418110.5",
          "protein_id": "ENSP00000392526.1",
          "transcript_support_level": 4,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 85,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 260,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000418110.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 6,
          "exon_rank_end": null,
          "exon_count": 7,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "ENST00000433369.6",
          "protein_id": "ENSP00000404050.1",
          "transcript_support_level": 5,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 44,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 135,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000433369.6"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.482G>A",
          "hgvs_p": "p.Arg161Gln",
          "transcript": "XM_047420673.1",
          "protein_id": "XP_047276629.1",
          "transcript_support_level": null,
          "aa_start": 161,
          "aa_end": null,
          "aa_length": 807,
          "cds_start": 482,
          "cds_end": null,
          "cds_length": 2424,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047420673.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.386G>A",
          "hgvs_p": "p.Arg129Gln",
          "transcript": "XM_047420674.1",
          "protein_id": "XP_047276630.1",
          "transcript_support_level": null,
          "aa_start": 129,
          "aa_end": null,
          "aa_length": 775,
          "cds_start": 386,
          "cds_end": null,
          "cds_length": 2328,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047420674.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.305G>A",
          "hgvs_p": "p.Arg102Gln",
          "transcript": "XM_006716073.5",
          "protein_id": "XP_006716136.1",
          "transcript_support_level": null,
          "aa_start": 102,
          "aa_end": null,
          "aa_length": 748,
          "cds_start": 305,
          "cds_end": null,
          "cds_length": 2247,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_006716073.5"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.56G>A",
          "hgvs_p": "p.Arg19Gln",
          "transcript": "XM_017012474.3",
          "protein_id": "XP_016867963.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 665,
          "cds_start": 56,
          "cds_end": null,
          "cds_length": 1998,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_017012474.3"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 3,
          "exon_rank_end": null,
          "exon_count": 16,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.56G>A",
          "hgvs_p": "p.Arg19Gln",
          "transcript": "XM_047420675.1",
          "protein_id": "XP_047276631.1",
          "transcript_support_level": null,
          "aa_start": 19,
          "aa_end": null,
          "aa_length": 665,
          "cds_start": 56,
          "cds_end": null,
          "cds_length": 1998,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
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          "biotype": "protein_coding",
          "feature": "XM_047420675.1"
        },
        {
          "aa_ref": "R",
          "aa_alt": "Q",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 18,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.44G>A",
          "hgvs_p": "p.Arg15Gln",
          "transcript": "XM_047420676.1",
          "protein_id": "XP_047276632.1",
          "transcript_support_level": null,
          "aa_start": 15,
          "aa_end": null,
          "aa_length": 661,
          "cds_start": 44,
          "cds_end": null,
          "cds_length": 1986,
          "cdna_start": null,
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          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047420676.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "5_prime_UTR_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 13,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.-96G>A",
          "hgvs_p": null,
          "transcript": "XM_047420677.1",
          "protein_id": "XP_047276633.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 567,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 1704,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "XM_047420677.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "intron_variant"
          ],
          "exon_rank": null,
          "exon_rank_end": null,
          "exon_count": 15,
          "intron_rank": 4,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "c.381+1912G>A",
          "hgvs_p": null,
          "transcript": "ENST00000962770.1",
          "protein_id": "ENSP00000632829.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": 723,
          "cds_start": null,
          "cds_end": null,
          "cds_length": 2172,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "protein_coding",
          "feature": "ENST00000962770.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 2,
          "exon_rank_end": null,
          "exon_count": 8,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "n.44G>A",
          "hgvs_p": null,
          "transcript": "ENST00000447995.2",
          "protein_id": "ENSP00000397364.1",
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "nonsense_mediated_decay",
          "feature": "ENST00000447995.2"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 2,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "n.414G>A",
          "hgvs_p": null,
          "transcript": "ENST00000481154.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000481154.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 1,
          "exon_rank_end": null,
          "exon_count": 4,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "n.17G>A",
          "hgvs_p": null,
          "transcript": "ENST00000494248.1",
          "protein_id": null,
          "transcript_support_level": 3,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "retained_intron",
          "feature": "ENST00000494248.1"
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 5,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "PTPN12",
          "gene_hgnc_id": 9645,
          "hgvs_c": "n.5319G>A",
          "hgvs_p": null,
          "transcript": "XR_007060120.1",
          "protein_id": null,
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": null,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": null,
          "mane_select": null,
          "mane_plus": null,
          "biotype": "pseudogene",
          "feature": "XR_007060120.1"
        }
      ],
      "gene_symbol": "PTPN12",
      "gene_hgnc_id": 9645,
      "dbsnp": "rs199903228",
      "frequency_reference_population": 0.000008094716,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 13,
      "gnomad_exomes_af": 0.00000825263,
      "gnomad_genomes_af": 0.00000658311,
      "gnomad_exomes_ac": 12,
      "gnomad_genomes_ac": 1,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": 0,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.3789837956428528,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0.009999999776482582,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.142,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.8515,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.13,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": 6.116,
      "phylop100way_prediction": "Uncertain_significance",
      "spliceai_max_score": 0.01,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -1,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "BP4",
      "acmg_by_gene": [
        {
          "score": -1,
          "benign_score": 1,
          "pathogenic_score": 0,
          "criteria": [
            "BP4"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_002835.4",
          "gene_symbol": "PTPN12",
          "hgnc_id": 9645,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD",
          "hgvs_c": "c.401G>A",
          "hgvs_p": "p.Arg134Gln"
        }
      ],
      "clinvar_disease": "not specified",
      "clinvar_classification": "Uncertain significance",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "US:1",
      "phenotype_combined": "not specified",
      "pathogenicity_classification_combined": "Uncertain significance",
      "custom_annotations": null
    }
  ],
  "message": null
}