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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-869511-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=869511&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "7",
      "pos": 869511,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "ENST00000401592.6",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2143G>A",
          "hgvs_p": "p.Val715Ile",
          "transcript": "NM_001130965.3",
          "protein_id": "NP_001124437.1",
          "transcript_support_level": null,
          "aa_start": 715,
          "aa_end": null,
          "aa_length": 785,
          "cds_start": 2143,
          "cds_end": null,
          "cds_length": 2358,
          "cdna_start": 2192,
          "cdna_end": null,
          "cdna_length": 4010,
          "mane_select": "ENST00000401592.6",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 17,
          "exon_rank_end": null,
          "exon_count": 19,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2143G>A",
          "hgvs_p": "p.Val715Ile",
          "transcript": "ENST00000401592.6",
          "protein_id": "ENSP00000384015.1",
          "transcript_support_level": 1,
          "aa_start": 715,
          "aa_end": null,
          "aa_length": 785,
          "cds_start": 2143,
          "cds_end": null,
          "cds_length": 2358,
          "cdna_start": 2192,
          "cdna_end": null,
          "cdna_length": 4010,
          "mane_select": "NM_001130965.3",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 17,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.1918G>A",
          "hgvs_p": "p.Val640Ile",
          "transcript": "ENST00000429178.5",
          "protein_id": "ENSP00000409909.1",
          "transcript_support_level": 1,
          "aa_start": 640,
          "aa_end": null,
          "aa_length": 710,
          "cds_start": 1918,
          "cds_end": null,
          "cds_length": 2133,
          "cdna_start": 1918,
          "cdna_end": null,
          "cdna_length": 3701,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 8,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "n.2252G>A",
          "hgvs_p": null,
          "transcript": "ENST00000475971.5",
          "protein_id": null,
          "transcript_support_level": 1,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 4038,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2557G>A",
          "hgvs_p": "p.Val853Ile",
          "transcript": "NM_001367651.1",
          "protein_id": "NP_001354580.1",
          "transcript_support_level": null,
          "aa_start": 853,
          "aa_end": null,
          "aa_length": 923,
          "cds_start": 2557,
          "cds_end": null,
          "cds_length": 2772,
          "cdna_start": 2632,
          "cdna_end": null,
          "cdna_length": 4450,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2536G>A",
          "hgvs_p": "p.Val846Ile",
          "transcript": "NM_001367705.1",
          "protein_id": "NP_001354634.1",
          "transcript_support_level": null,
          "aa_start": 846,
          "aa_end": null,
          "aa_length": 916,
          "cds_start": 2536,
          "cds_end": null,
          "cds_length": 2751,
          "cdna_start": 2587,
          "cdna_end": null,
          "cdna_length": 4405,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2533G>A",
          "hgvs_p": "p.Val845Ile",
          "transcript": "NM_001367678.1",
          "protein_id": "NP_001354607.1",
          "transcript_support_level": null,
          "aa_start": 845,
          "aa_end": null,
          "aa_length": 915,
          "cds_start": 2533,
          "cds_end": null,
          "cds_length": 2748,
          "cdna_start": 2584,
          "cdna_end": null,
          "cdna_length": 4402,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2452G>A",
          "hgvs_p": "p.Val818Ile",
          "transcript": "NM_001367692.1",
          "protein_id": "NP_001354621.1",
          "transcript_support_level": null,
          "aa_start": 818,
          "aa_end": null,
          "aa_length": 888,
          "cds_start": 2452,
          "cds_end": null,
          "cds_length": 2667,
          "cdna_start": 2503,
          "cdna_end": null,
          "cdna_length": 4321,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2449G>A",
          "hgvs_p": "p.Val817Ile",
          "transcript": "NM_001367677.1",
          "protein_id": "NP_001354606.1",
          "transcript_support_level": null,
          "aa_start": 817,
          "aa_end": null,
          "aa_length": 887,
          "cds_start": 2449,
          "cds_end": null,
          "cds_length": 2664,
          "cdna_start": 2500,
          "cdna_end": null,
          "cdna_length": 4318,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2536G>A",
          "hgvs_p": "p.Val846Ile",
          "transcript": "NM_001367703.1",
          "protein_id": "NP_001354632.1",
          "transcript_support_level": null,
          "aa_start": 846,
          "aa_end": null,
          "aa_length": 885,
          "cds_start": 2536,
          "cds_end": null,
          "cds_length": 2658,
          "cdna_start": 2587,
          "cdna_end": null,
          "cdna_length": 4312,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 21,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2533G>A",
          "hgvs_p": "p.Val845Ile",
          "transcript": "NM_001367699.1",
          "protein_id": "NP_001354628.1",
          "transcript_support_level": null,
          "aa_start": 845,
          "aa_end": null,
          "aa_length": 884,
          "cds_start": 2533,
          "cds_end": null,
          "cds_length": 2655,
          "cdna_start": 2584,
          "cdna_end": null,
          "cdna_length": 4309,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2434G>A",
          "hgvs_p": "p.Val812Ile",
          "transcript": "NM_001367690.1",
          "protein_id": "NP_001354619.1",
          "transcript_support_level": null,
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          "cds_start": 2434,
          "cds_end": null,
          "cds_length": 2649,
          "cdna_start": 2485,
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          "cdna_length": 4303,
          "mane_select": null,
          "mane_plus": null,
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        },
        {
          "aa_ref": "V",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 20,
          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2425G>A",
          "hgvs_p": "p.Val809Ile",
          "transcript": "NM_001367641.1",
          "protein_id": "NP_001354570.1",
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          "aa_end": null,
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          "cds_start": 2425,
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          "cdna_start": 2476,
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          "feature": null
        },
        {
          "aa_ref": "V",
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          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
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          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2422G>A",
          "hgvs_p": "p.Val808Ile",
          "transcript": "NM_001367698.1",
          "protein_id": "NP_001354627.1",
          "transcript_support_level": null,
          "aa_start": 808,
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          "aa_length": 878,
          "cds_start": 2422,
          "cds_end": null,
          "cds_length": 2637,
          "cdna_start": 2473,
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          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
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          ],
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          "intron_rank": null,
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          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2386G>A",
          "hgvs_p": "p.Val796Ile",
          "transcript": "NM_001367666.1",
          "protein_id": "NP_001354595.1",
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          "aa_end": null,
          "aa_length": 866,
          "cds_start": 2386,
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          "cdna_start": 2490,
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          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
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          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2383G>A",
          "hgvs_p": "p.Val795Ile",
          "transcript": "NM_001367691.1",
          "protein_id": "NP_001354620.1",
          "transcript_support_level": null,
          "aa_start": 795,
          "aa_end": null,
          "aa_length": 865,
          "cds_start": 2383,
          "cds_end": null,
          "cds_length": 2598,
          "cdna_start": 2487,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
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          "protein_coding": true,
          "strand": true,
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          ],
          "exon_rank": 20,
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          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2353G>A",
          "hgvs_p": "p.Val785Ile",
          "transcript": "NM_001367655.1",
          "protein_id": "NP_001354584.1",
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          "aa_length": 855,
          "cds_start": 2353,
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          "cdna_start": 2457,
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          "feature": null
        },
        {
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          "intron_rank": null,
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          "gene_symbol": "SUN1",
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          "hgvs_c": "c.2353G>A",
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          "feature": null
        },
        {
          "aa_ref": "V",
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          "exon_rank_end": null,
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          "intron_rank": null,
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          "gene_symbol": "SUN1",
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          "hgvs_c": "c.2341G>A",
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          "transcript": "NM_001367674.1",
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          "cds_start": 2341,
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          "cdna_start": 2392,
          "cdna_end": null,
          "cdna_length": 4210,
          "mane_select": null,
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          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "SUN1",
          "gene_hgnc_id": 18587,
          "hgvs_c": "c.2338G>A",
          "hgvs_p": "p.Val780Ile",
          "transcript": "NM_001367697.1",
          "protein_id": "NP_001354626.1",
          "transcript_support_level": null,
          "aa_start": 780,
          "aa_end": null,
          "aa_length": 850,
          "cds_start": 2338,
          "cds_end": null,
          "cds_length": 2553,
          "cdna_start": 2389,
          "cdna_end": null,
          "cdna_length": 4207,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 20,
          "exon_rank_end": null,
          "exon_count": 22,
          "intron_rank": null,
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      "acmg_score": -9,
      "acmg_classification": "Benign",
      "acmg_criteria": "BP4_Strong,BP6,BS2",
      "acmg_by_gene": [
        {
          "score": -9,
          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "ENST00000401592.6",
          "gene_symbol": "SUN1",
          "hgnc_id": 18587,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "c.2143G>A",
          "hgvs_p": "p.Val715Ile"
        },
        {
          "score": -9,
          "benign_score": 9,
          "pathogenic_score": 0,
          "criteria": [
            "BP4_Strong",
            "BP6",
            "BS2"
          ],
          "verdict": "Benign",
          "transcript": "XR_007060177.1",
          "gene_symbol": "LOC124901568",
          "hgnc_id": null,
          "effects": [
            "intron_variant"
          ],
          "inheritance_mode": "",
          "hgvs_c": "n.282-1818C>T",
          "hgvs_p": null
        }
      ],
      "clinvar_disease": "Emery-Dreifuss muscular dystrophy,SUN1-related disorder,not specified",
      "clinvar_classification": "Conflicting classifications of pathogenicity",
      "clinvar_review_status": "criteria provided, conflicting classifications",
      "clinvar_submissions_summary": "US:1 LB:1",
      "phenotype_combined": "Emery-Dreifuss muscular dystrophy|not specified|SUN1-related disorder",
      "pathogenicity_classification_combined": "Conflicting classifications of pathogenicity",
      "custom_annotations": null
    }
  ],
  "message": null
}