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GeneBe API Showcase

This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.

API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.

Documentation & Advanced Usage

Complete API documentation:docs.genebe.net/docs/api/overview/

Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/

Python client for pandas:pypi.org/project/genebe/

Java CLI for VCF files:github.com/pstawinski/genebe-cli

All tools documented at:docs.genebe.net

API Request Examples for Variant: 7-92085588-G-A (hg38)

Bash / cURL Example

bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=92085588&ref=G&alt=A&genome=hg38&allGenes=true"

API Response

json
{
  "variants": [
    {
      "chr": "7",
      "pos": 92085588,
      "ref": "G",
      "alt": "A",
      "effect": "missense_variant",
      "transcript": "NM_005751.5",
      "consequences": [
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8926G>A",
          "hgvs_p": "p.Val2976Ile",
          "transcript": "NM_005751.5",
          "protein_id": "NP_005742.4",
          "transcript_support_level": null,
          "aa_start": 2976,
          "aa_end": null,
          "aa_length": 3907,
          "cds_start": 8926,
          "cds_end": null,
          "cds_length": 11724,
          "cdna_start": 9164,
          "cdna_end": null,
          "cdna_length": 12476,
          "mane_select": "ENST00000356239.8",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": true,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8926G>A",
          "hgvs_p": "p.Val2976Ile",
          "transcript": "ENST00000356239.8",
          "protein_id": "ENSP00000348573.3",
          "transcript_support_level": 1,
          "aa_start": 2976,
          "aa_end": null,
          "aa_length": 3907,
          "cds_start": 8926,
          "cds_end": null,
          "cds_length": 11724,
          "cdna_start": 9164,
          "cdna_end": null,
          "cdna_length": 12476,
          "mane_select": "NM_005751.5",
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.3571G>A",
          "hgvs_p": "p.Val1191Ile",
          "transcript": "ENST00000491695.2",
          "protein_id": "ENSP00000494626.2",
          "transcript_support_level": 1,
          "aa_start": 1191,
          "aa_end": null,
          "aa_length": 2122,
          "cds_start": 3571,
          "cds_end": null,
          "cds_length": 6369,
          "cdna_start": 4114,
          "cdna_end": null,
          "cdna_length": 7413,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 9,
          "exon_rank_end": null,
          "exon_count": 23,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.2419G>A",
          "hgvs_p": "p.Val807Ile",
          "transcript": "ENST00000394534.7",
          "protein_id": "ENSP00000378042.3",
          "transcript_support_level": 1,
          "aa_start": 807,
          "aa_end": null,
          "aa_length": 1571,
          "cds_start": 2419,
          "cds_end": null,
          "cds_length": 4716,
          "cdna_start": 2419,
          "cdna_end": null,
          "cdna_length": 5149,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8998G>A",
          "hgvs_p": "p.Val3000Ile",
          "transcript": "ENST00000359028.7",
          "protein_id": "ENSP00000351922.4",
          "transcript_support_level": 5,
          "aa_start": 3000,
          "aa_end": null,
          "aa_length": 3931,
          "cds_start": 8998,
          "cds_end": null,
          "cds_length": 11796,
          "cdna_start": 8998,
          "cdna_end": null,
          "cdna_length": 12219,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8926G>A",
          "hgvs_p": "p.Val2976Ile",
          "transcript": "ENST00000681412.1",
          "protein_id": "ENSP00000506486.1",
          "transcript_support_level": null,
          "aa_start": 2976,
          "aa_end": null,
          "aa_length": 3923,
          "cds_start": 8926,
          "cds_end": null,
          "cds_length": 11772,
          "cdna_start": 9148,
          "cdna_end": null,
          "cdna_length": 13915,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 37,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8965G>A",
          "hgvs_p": "p.Val2989Ile",
          "transcript": "ENST00000680534.1",
          "protein_id": "ENSP00000506674.1",
          "transcript_support_level": null,
          "aa_start": 2989,
          "aa_end": null,
          "aa_length": 3920,
          "cds_start": 8965,
          "cds_end": null,
          "cds_length": 11763,
          "cdna_start": 9225,
          "cdna_end": null,
          "cdna_length": 12537,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8902G>A",
          "hgvs_p": "p.Val2968Ile",
          "transcript": "ENST00000681722.1",
          "protein_id": "ENSP00000506566.1",
          "transcript_support_level": null,
          "aa_start": 2968,
          "aa_end": null,
          "aa_length": 3915,
          "cds_start": 8902,
          "cds_end": null,
          "cds_length": 11748,
          "cdna_start": 9140,
          "cdna_end": null,
          "cdna_length": 12328,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8902G>A",
          "hgvs_p": "p.Val2968Ile",
          "transcript": "NM_147185.3",
          "protein_id": "NP_671714.1",
          "transcript_support_level": null,
          "aa_start": 2968,
          "aa_end": null,
          "aa_length": 3899,
          "cds_start": 8902,
          "cds_end": null,
          "cds_length": 11700,
          "cdna_start": 9140,
          "cdna_end": null,
          "cdna_length": 12452,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 50,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8902G>A",
          "hgvs_p": "p.Val2968Ile",
          "transcript": "ENST00000680766.1",
          "protein_id": "ENSP00000505204.1",
          "transcript_support_level": null,
          "aa_start": 2968,
          "aa_end": null,
          "aa_length": 3899,
          "cds_start": 8902,
          "cds_end": null,
          "cds_length": 11700,
          "cdna_start": 9124,
          "cdna_end": null,
          "cdna_length": 12423,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8872G>A",
          "hgvs_p": "p.Val2958Ile",
          "transcript": "ENST00000679521.1",
          "protein_id": "ENSP00000505456.1",
          "transcript_support_level": null,
          "aa_start": 2958,
          "aa_end": null,
          "aa_length": 3889,
          "cds_start": 8872,
          "cds_end": null,
          "cds_length": 11670,
          "cdna_start": 9110,
          "cdna_end": null,
          "cdna_length": 12422,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8833G>A",
          "hgvs_p": "p.Val2945Ile",
          "transcript": "ENST00000680181.1",
          "protein_id": "ENSP00000505548.1",
          "transcript_support_level": null,
          "aa_start": 2945,
          "aa_end": null,
          "aa_length": 3876,
          "cds_start": 8833,
          "cds_end": null,
          "cds_length": 11631,
          "cdna_start": 9071,
          "cdna_end": null,
          "cdna_length": 12370,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8785G>A",
          "hgvs_p": "p.Val2929Ile",
          "transcript": "ENST00000680513.1",
          "protein_id": "ENSP00000505284.1",
          "transcript_support_level": null,
          "aa_start": 2929,
          "aa_end": null,
          "aa_length": 3860,
          "cds_start": 8785,
          "cds_end": null,
          "cds_length": 11583,
          "cdna_start": 9045,
          "cdna_end": null,
          "cdna_length": 12357,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8749G>A",
          "hgvs_p": "p.Val2917Ile",
          "transcript": "ENST00000680072.1",
          "protein_id": "ENSP00000506581.1",
          "transcript_support_level": null,
          "aa_start": 2917,
          "aa_end": null,
          "aa_length": 3848,
          "cds_start": 8749,
          "cds_end": null,
          "cds_length": 11547,
          "cdna_start": 9009,
          "cdna_end": null,
          "cdna_length": 12321,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8902G>A",
          "hgvs_p": "p.Val2968Ile",
          "transcript": "ENST00000680952.1",
          "protein_id": "ENSP00000506407.1",
          "transcript_support_level": null,
          "aa_start": 2968,
          "aa_end": null,
          "aa_length": 3827,
          "cds_start": 8902,
          "cds_end": null,
          "cds_length": 11484,
          "cdna_start": 9124,
          "cdna_end": null,
          "cdna_length": 12118,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 35,
          "exon_rank_end": null,
          "exon_count": 49,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.8668G>A",
          "hgvs_p": "p.Val2890Ile",
          "transcript": "ENST00000679821.1",
          "protein_id": "ENSP00000506040.1",
          "transcript_support_level": null,
          "aa_start": 2890,
          "aa_end": null,
          "aa_length": 3821,
          "cds_start": 8668,
          "cds_end": null,
          "cds_length": 11466,
          "cdna_start": 8908,
          "cdna_end": null,
          "cdna_length": 12207,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "V",
          "aa_alt": "I",
          "canonical": false,
          "protein_coding": true,
          "strand": true,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 15,
          "exon_rank_end": null,
          "exon_count": 29,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "c.3571G>A",
          "hgvs_p": "p.Val1191Ile",
          "transcript": "NM_001379277.1",
          "protein_id": "NP_001366206.1",
          "transcript_support_level": null,
          "aa_start": 1191,
          "aa_end": null,
          "aa_length": 2122,
          "cds_start": 3571,
          "cds_end": null,
          "cds_length": 6369,
          "cdna_start": 4162,
          "cdna_end": null,
          "cdna_length": 7474,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": "P",
          "aa_alt": "S",
          "canonical": false,
          "protein_coding": true,
          "strand": false,
          "consequences": [
            "missense_variant"
          ],
          "exon_rank": 10,
          "exon_rank_end": null,
          "exon_count": 10,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "CYP51A1",
          "gene_hgnc_id": 2649,
          "hgvs_c": "c.1366C>T",
          "hgvs_p": "p.Pro456Ser",
          "transcript": "ENST00000691309.1",
          "protein_id": "ENSP00000510368.1",
          "transcript_support_level": null,
          "aa_start": 456,
          "aa_end": null,
          "aa_length": 458,
          "cds_start": 1366,
          "cds_end": null,
          "cds_length": 1377,
          "cdna_start": 1505,
          "cdna_end": null,
          "cdna_length": 2106,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 4,
          "exon_rank_end": null,
          "exon_count": 6,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "n.766G>A",
          "hgvs_p": null,
          "transcript": "ENST00000435423.2",
          "protein_id": null,
          "transcript_support_level": 2,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 3127,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 51,
          "intron_rank": null,
          "intron_rank_end": null,
          "gene_symbol": "AKAP9",
          "gene_hgnc_id": 379,
          "hgvs_c": "n.8902G>A",
          "hgvs_p": null,
          "transcript": "ENST00000679448.1",
          "protein_id": "ENSP00000505889.1",
          "transcript_support_level": null,
          "aa_start": null,
          "aa_end": null,
          "aa_length": null,
          "cds_start": -4,
          "cds_end": null,
          "cds_length": null,
          "cdna_start": null,
          "cdna_end": null,
          "cdna_length": 12677,
          "mane_select": null,
          "mane_plus": null,
          "biotype": null,
          "feature": null
        },
        {
          "aa_ref": null,
          "aa_alt": null,
          "canonical": false,
          "protein_coding": false,
          "strand": true,
          "consequences": [
            "non_coding_transcript_exon_variant"
          ],
          "exon_rank": 36,
          "exon_rank_end": null,
          "exon_count": 48,
          "intron_rank": null,
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          "gene_symbol": "AKAP9",
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        {
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      ],
      "gene_symbol": "AKAP9",
      "gene_hgnc_id": 379,
      "dbsnp": "rs1416774999",
      "frequency_reference_population": 6.841901e-7,
      "hom_count_reference_population": 0,
      "allele_count_reference_population": 1,
      "gnomad_exomes_af": 6.8419e-7,
      "gnomad_genomes_af": null,
      "gnomad_exomes_ac": 1,
      "gnomad_genomes_ac": null,
      "gnomad_exomes_homalt": 0,
      "gnomad_genomes_homalt": null,
      "gnomad_mito_homoplasmic": null,
      "gnomad_mito_heteroplasmic": null,
      "computational_score_selected": 0.02106112241744995,
      "computational_prediction_selected": "Benign",
      "computational_source_selected": "MetaRNN",
      "splice_score_selected": 0,
      "splice_prediction_selected": "Benign",
      "splice_source_selected": "max_spliceai",
      "revel_score": 0.037,
      "revel_prediction": "Benign",
      "alphamissense_score": 0.0706,
      "alphamissense_prediction": null,
      "bayesdelnoaf_score": -0.63,
      "bayesdelnoaf_prediction": "Benign",
      "phylop100way_score": -0.1,
      "phylop100way_prediction": "Benign",
      "spliceai_max_score": 0,
      "spliceai_max_prediction": "Benign",
      "dbscsnv_ada_score": null,
      "dbscsnv_ada_prediction": null,
      "apogee2_score": null,
      "apogee2_prediction": null,
      "mitotip_score": null,
      "mitotip_prediction": null,
      "acmg_score": -4,
      "acmg_classification": "Likely_benign",
      "acmg_criteria": "PM2,BP4_Strong,BP6_Moderate",
      "acmg_by_gene": [
        {
          "score": -4,
          "benign_score": 6,
          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP6_Moderate"
          ],
          "verdict": "Likely_benign",
          "transcript": "NM_005751.5",
          "gene_symbol": "AKAP9",
          "hgnc_id": 379,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AD,AR",
          "hgvs_c": "c.8926G>A",
          "hgvs_p": "p.Val2976Ile"
        },
        {
          "score": -4,
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          "pathogenic_score": 2,
          "criteria": [
            "PM2",
            "BP4_Strong",
            "BP6_Moderate"
          ],
          "verdict": "Likely_benign",
          "transcript": "ENST00000691309.1",
          "gene_symbol": "CYP51A1",
          "hgnc_id": 2649,
          "effects": [
            "missense_variant"
          ],
          "inheritance_mode": "AR",
          "hgvs_c": "c.1366C>T",
          "hgvs_p": "p.Pro456Ser"
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      ],
      "clinvar_disease": "Cardiovascular phenotype",
      "clinvar_classification": "Likely benign",
      "clinvar_review_status": "criteria provided, single submitter",
      "clinvar_submissions_summary": "LB:1",
      "phenotype_combined": "Cardiovascular phenotype",
      "pathogenicity_classification_combined": "Likely benign",
      "custom_annotations": null
    }
  ],
  "message": null
}