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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-95405465-T-C (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=95405465&ref=T&alt=C&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 95405465,
"ref": "T",
"alt": "C",
"effect": "synonymous_variant",
"transcript": "NM_000305.3",
"consequences": [
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.930A>G",
"hgvs_p": "p.Leu310Leu",
"transcript": "NM_000305.3",
"protein_id": "NP_000296.2",
"transcript_support_level": null,
"aa_start": 310,
"aa_end": null,
"aa_length": 354,
"cds_start": 930,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "ENST00000222572.8",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_000305.3"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.930A>G",
"hgvs_p": "p.Leu310Leu",
"transcript": "ENST00000222572.8",
"protein_id": "ENSP00000222572.3",
"transcript_support_level": 1,
"aa_start": 310,
"aa_end": null,
"aa_length": 354,
"cds_start": 930,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": "NM_000305.3",
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000222572.8"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.993A>G",
"hgvs_p": "p.Leu331Leu",
"transcript": "ENST00000633192.1",
"protein_id": "ENSP00000488378.1",
"transcript_support_level": 1,
"aa_start": 331,
"aa_end": null,
"aa_length": 375,
"cds_start": 993,
"cds_end": null,
"cds_length": 1128,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000633192.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.930A>G",
"hgvs_p": "p.Leu310Leu",
"transcript": "ENST00000633531.1",
"protein_id": "ENSP00000488838.1",
"transcript_support_level": 1,
"aa_start": 310,
"aa_end": null,
"aa_length": 354,
"cds_start": 930,
"cds_end": null,
"cds_length": 1065,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000633531.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.894A>G",
"hgvs_p": "p.Leu298Leu",
"transcript": "ENST00000433091.6",
"protein_id": "ENSP00000404622.2",
"transcript_support_level": 1,
"aa_start": 298,
"aa_end": null,
"aa_length": 342,
"cds_start": 894,
"cds_end": null,
"cds_length": 1029,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000433091.6"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "n.*795A>G",
"hgvs_p": null,
"transcript": "ENST00000446142.5",
"protein_id": "ENSP00000405211.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000446142.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "n.*217A>G",
"hgvs_p": null,
"transcript": "ENST00000455123.5",
"protein_id": "ENSP00000414515.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000455123.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "n.*795A>G",
"hgvs_p": null,
"transcript": "ENST00000446142.5",
"protein_id": "ENSP00000405211.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000446142.5"
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": false,
"consequences": [
"3_prime_UTR_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "n.*217A>G",
"hgvs_p": null,
"transcript": "ENST00000455123.5",
"protein_id": "ENSP00000414515.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": null,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "nonsense_mediated_decay",
"feature": "ENST00000455123.5"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.969A>G",
"hgvs_p": "p.Leu323Leu",
"transcript": "ENST00000951228.1",
"protein_id": "ENSP00000621287.1",
"transcript_support_level": null,
"aa_start": 323,
"aa_end": null,
"aa_length": 367,
"cds_start": 969,
"cds_end": null,
"cds_length": 1104,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000951228.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.927A>G",
"hgvs_p": "p.Leu309Leu",
"transcript": "ENST00000857127.1",
"protein_id": "ENSP00000527186.1",
"transcript_support_level": null,
"aa_start": 309,
"aa_end": null,
"aa_length": 353,
"cds_start": 927,
"cds_end": null,
"cds_length": 1062,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857127.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.921A>G",
"hgvs_p": "p.Leu307Leu",
"transcript": "ENST00000951226.1",
"protein_id": "ENSP00000621285.1",
"transcript_support_level": null,
"aa_start": 307,
"aa_end": null,
"aa_length": 351,
"cds_start": 921,
"cds_end": null,
"cds_length": 1056,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000951226.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.915A>G",
"hgvs_p": "p.Leu305Leu",
"transcript": "ENST00000951227.1",
"protein_id": "ENSP00000621286.1",
"transcript_support_level": null,
"aa_start": 305,
"aa_end": null,
"aa_length": 349,
"cds_start": 915,
"cds_end": null,
"cds_length": 1050,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000951227.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.894A>G",
"hgvs_p": "p.Leu298Leu",
"transcript": "NM_001018161.2",
"protein_id": "NP_001018171.1",
"transcript_support_level": null,
"aa_start": 298,
"aa_end": null,
"aa_length": 342,
"cds_start": 894,
"cds_end": null,
"cds_length": 1029,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "NM_001018161.2"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 10,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.894A>G",
"hgvs_p": "p.Leu298Leu",
"transcript": "ENST00000857126.1",
"protein_id": "ENSP00000527185.1",
"transcript_support_level": null,
"aa_start": 298,
"aa_end": null,
"aa_length": 342,
"cds_start": 894,
"cds_end": null,
"cds_length": 1029,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857126.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.891A>G",
"hgvs_p": "p.Leu297Leu",
"transcript": "ENST00000857129.1",
"protein_id": "ENSP00000527188.1",
"transcript_support_level": null,
"aa_start": 297,
"aa_end": null,
"aa_length": 341,
"cds_start": 891,
"cds_end": null,
"cds_length": 1026,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857129.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.864A>G",
"hgvs_p": "p.Leu288Leu",
"transcript": "ENST00000951229.1",
"protein_id": "ENSP00000621288.1",
"transcript_support_level": null,
"aa_start": 288,
"aa_end": null,
"aa_length": 332,
"cds_start": 864,
"cds_end": null,
"cds_length": 999,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000951229.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.801A>G",
"hgvs_p": "p.Leu267Leu",
"transcript": "ENST00000857130.1",
"protein_id": "ENSP00000527189.1",
"transcript_support_level": null,
"aa_start": 267,
"aa_end": null,
"aa_length": 311,
"cds_start": 801,
"cds_end": null,
"cds_length": 936,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857130.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.777A>G",
"hgvs_p": "p.Leu259Leu",
"transcript": "ENST00000857132.1",
"protein_id": "ENSP00000527191.1",
"transcript_support_level": null,
"aa_start": 259,
"aa_end": null,
"aa_length": 303,
"cds_start": 777,
"cds_end": null,
"cds_length": 912,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857132.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 9,
"exon_rank_end": null,
"exon_count": 9,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.771A>G",
"hgvs_p": "p.Leu257Leu",
"transcript": "ENST00000857131.1",
"protein_id": "ENSP00000527190.1",
"transcript_support_level": null,
"aa_start": 257,
"aa_end": null,
"aa_length": 301,
"cds_start": 771,
"cds_end": null,
"cds_length": 906,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857131.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 7,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.708A>G",
"hgvs_p": "p.Leu236Leu",
"transcript": "ENST00000857128.1",
"protein_id": "ENSP00000527187.1",
"transcript_support_level": null,
"aa_start": 236,
"aa_end": null,
"aa_length": 280,
"cds_start": 708,
"cds_end": null,
"cds_length": 843,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
"feature": "ENST00000857128.1"
},
{
"aa_ref": "L",
"aa_alt": "L",
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"synonymous_variant"
],
"exon_rank": 8,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "PON2",
"gene_hgnc_id": 9205,
"hgvs_c": "c.726A>G",
"hgvs_p": "p.Leu242Leu",
"transcript": "XM_005250453.2",
"protein_id": "XP_005250510.1",
"transcript_support_level": null,
"aa_start": 242,
"aa_end": null,
"aa_length": 286,
"cds_start": 726,
"cds_end": null,
"cds_length": 861,
"cdna_start": null,
"cdna_end": null,
"cdna_length": null,
"mane_select": null,
"mane_plus": null,
"biotype": "protein_coding",
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{
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{
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{
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{
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{
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],
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],
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"gnomad_mito_heteroplasmic": null,
"computational_score_selected": -0.5199999809265137,
"computational_prediction_selected": "Benign",
"computational_source_selected": "BayesDel_noAF",
"splice_score_selected": 0,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
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"revel_prediction": null,
"alphamissense_score": null,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.52,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.083,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0,
"spliceai_max_prediction": "Benign",
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"apogee2_prediction": null,
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"acmg_score": -11,
"acmg_classification": "Benign",
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"acmg_by_gene": [
{
"score": -11,
"benign_score": 11,
"pathogenic_score": 0,
"criteria": [
"BP4_Strong",
"BP6_Moderate",
"BP7",
"BS2"
],
"verdict": "Benign",
"transcript": "NM_000305.3",
"gene_symbol": "PON2",
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"effects": [
"synonymous_variant"
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"inheritance_mode": "AD",
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"hgvs_p": "p.Leu310Leu"
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{
"score": -6,
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"criteria": [
"BP4_Strong",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "ENST00000718462.1",
"gene_symbol": "ENSG00000233942",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.589+8437T>C",
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},
{
"score": -6,
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"criteria": [
"BP4_Strong",
"BP6_Moderate"
],
"verdict": "Likely_benign",
"transcript": "XR_007060439.1",
"gene_symbol": "LOC107986822",
"hgnc_id": null,
"effects": [
"intron_variant"
],
"inheritance_mode": "",
"hgvs_c": "n.557+8437T>C",
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}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Benign",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "B:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Benign",
"custom_annotations": null
}
],
"message": null
}