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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-97872310-TGGCGCGGGGCGCAG-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=97872310&ref=TGGCGCGGGGCGCAG&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 97872310,
"ref": "TGGCGCGGGGCGCAG",
"alt": "T",
"effect": "intron_variant",
"transcript": "ENST00000394308.8",
"consequences": [
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ASNS",
"gene_hgnc_id": 753,
"hgvs_c": "c.-60+27_-60+40delCTGCGCCCCGCGCC",
"hgvs_p": null,
"transcript": "NM_001673.5",
"protein_id": "NP_001664.3",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 561,
"cds_start": -4,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2385,
"mane_select": "ENST00000394308.8",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": true,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ASNS",
"gene_hgnc_id": 753,
"hgvs_c": "c.-60+27_-60+40delCTGCGCCCCGCGCC",
"hgvs_p": null,
"transcript": "ENST00000394308.8",
"protein_id": "ENSP00000377845.3",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 561,
"cds_start": -4,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2385,
"mane_select": "NM_001673.5",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "ASNS",
"gene_hgnc_id": 753,
"hgvs_c": "c.-338+27_-338+40delCTGCGCCCCGCGCC",
"hgvs_p": null,
"transcript": "ENST00000175506.8",
"protein_id": "ENSP00000175506.4",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": 561,
"cds_start": -4,
"cds_end": null,
"cds_length": 1686,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 2356,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.110_123delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750621.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 645,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.91_104delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750622.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 629,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.84_97delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750623.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 836,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.117_130delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750624.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 436,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.110_123delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750625.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 525,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.106_119delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750626.1",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
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"cdna_start": null,
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"cdna_length": 307,
"mane_select": null,
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"biotype": null,
"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "ENSG00000297732",
"gene_hgnc_id": null,
"hgvs_c": "n.101_114delGCGGGGCGCAGGGC",
"hgvs_p": null,
"transcript": "ENST00000750627.1",
"protein_id": null,
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"aa_start": null,
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"aa_length": null,
"cds_start": -4,
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"cdna_start": null,
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"cdna_length": 500,
"mane_select": null,
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"feature": null
},
{
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 1,
"exon_rank_end": null,
"exon_count": 2,
"intron_rank": null,
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"gene_symbol": "ENSG00000297732",
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"hgvs_c": "n.91_104delGCGGGGCGCAGGGC",
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"transcript": "ENST00000750628.1",
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},
{
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"strand": true,
"consequences": [
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],
"exon_rank": 1,
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"exon_count": 2,
"intron_rank": null,
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"gene_symbol": "ENSG00000297732",
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},
{
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"strand": false,
"consequences": [
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],
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"exon_count": 14,
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"gene_symbol": "ASNS",
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"hgvs_c": "c.-60+27_-60+40delCTGCGCCCCGCGCC",
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},
{
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],
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},
{
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],
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"gene_symbol": "ASNS",
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"hgvs_c": "c.-49+27_-49+40delCTGCGCCCCGCGCC",
"hgvs_p": null,
"transcript": "NM_001178075.2",
"protein_id": "NP_001171546.1",
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},
{
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],
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"gene_symbol": "ASNS",
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},
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],
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"transcript": "ENST00000444334.5",
"protein_id": "ENSP00000406994.1",
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},
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],
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"intron_rank": 1,
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"gene_symbol": "ASNS",
"gene_hgnc_id": 753,
"hgvs_c": "c.-1+27_-1+40delCTGCGCCCCGCGCC",
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"transcript": "NM_001178076.2",
"protein_id": "NP_001171547.1",
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],
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],
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},
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],
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
"intron_variant"
],
"exon_rank": null,
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"intron_rank": 1,
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"gene_symbol": "ENSG00000284707",
"gene_hgnc_id": null,
"hgvs_c": "n.331-3248_331-3235delCTGCGCCCCGCGCC",
"hgvs_p": null,
"transcript": "ENST00000641315.1",
"protein_id": null,
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},
{
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"protein_coding": false,
"strand": false,
"consequences": [
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],
"exon_rank": null,
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"exon_count": 18,
"intron_rank": 6,
"intron_rank_end": null,
"gene_symbol": "ENSG00000284707",
"gene_hgnc_id": null,
"hgvs_c": "n.895+27_895+40delCTGCGCCCCGCGCC",
"hgvs_p": null,
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}
],
"message": null
}