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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 7-99836506-C-T (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=7&pos=99836506&ref=C&alt=T&genome=hg38&allGenes=true"API Response
json
{
"variants": [
{
"chr": "7",
"pos": 99836506,
"ref": "C",
"alt": "T",
"effect": "missense_variant",
"transcript": "NM_057095.3",
"consequences": [
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "NM_057095.3",
"protein_id": "NP_476436.1",
"transcript_support_level": null,
"aa_start": 42,
"aa_end": null,
"aa_length": 503,
"cds_start": 125,
"cds_end": null,
"cds_length": 1512,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 1707,
"mane_select": "ENST00000354829.7",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": true,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000354829.7",
"protein_id": "ENSP00000346887.3",
"transcript_support_level": 1,
"aa_start": 42,
"aa_end": null,
"aa_length": 503,
"cds_start": 125,
"cds_end": null,
"cds_length": 1512,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 1707,
"mane_select": "NM_057095.3",
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000222382.5",
"protein_id": "ENSP00000222382.5",
"transcript_support_level": 1,
"aa_start": 42,
"aa_end": null,
"aa_length": 504,
"cds_start": 125,
"cds_end": null,
"cds_length": 1515,
"cdna_start": 125,
"cdna_end": null,
"cdna_length": 1515,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000312017.9",
"protein_id": "ENSP00000312110.5",
"transcript_support_level": 1,
"aa_start": 42,
"aa_end": null,
"aa_length": 420,
"cds_start": 125,
"cds_end": null,
"cds_length": 1263,
"cdna_start": 125,
"cdna_end": null,
"cdna_length": 1349,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000417625.5",
"protein_id": "ENSP00000416581.1",
"transcript_support_level": 1,
"aa_start": 42,
"aa_end": null,
"aa_length": 393,
"cds_start": 125,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 198,
"cdna_end": null,
"cdna_length": 1255,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.125C>T",
"hgvs_p": null,
"transcript": "ENST00000434806.5",
"protein_id": "ENSP00000411653.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1633,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.72-2614C>T",
"hgvs_p": null,
"transcript": "ENST00000436834.5",
"protein_id": "ENSP00000415221.1",
"transcript_support_level": 1,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1279,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 13,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "NM_022820.5",
"protein_id": "NP_073731.1",
"transcript_support_level": null,
"aa_start": 42,
"aa_end": null,
"aa_length": 504,
"cds_start": 125,
"cds_end": null,
"cds_length": 1515,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 1710,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 12,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "NM_057096.4",
"protein_id": "NP_476437.1",
"transcript_support_level": null,
"aa_start": 42,
"aa_end": null,
"aa_length": 420,
"cds_start": 125,
"cds_end": null,
"cds_length": 1263,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 1544,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "NM_001278921.2",
"protein_id": "NP_001265850.1",
"transcript_support_level": null,
"aa_start": 42,
"aa_end": null,
"aa_length": 393,
"cds_start": 125,
"cds_end": null,
"cds_length": 1182,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 1377,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000415413.5",
"protein_id": "ENSP00000401521.1",
"transcript_support_level": 5,
"aa_start": 42,
"aa_end": null,
"aa_length": 292,
"cds_start": 125,
"cds_end": null,
"cds_length": 879,
"cdna_start": 192,
"cdna_end": null,
"cdna_length": 990,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": "T",
"aa_alt": "I",
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"missense_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile",
"transcript": "ENST00000631161.2",
"protein_id": "ENSP00000486759.1",
"transcript_support_level": 5,
"aa_start": 42,
"aa_end": null,
"aa_length": 74,
"cds_start": 125,
"cds_end": null,
"cds_length": 225,
"cdna_start": 228,
"cdna_end": null,
"cdna_length": 328,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.125C>T",
"hgvs_p": null,
"transcript": "ENST00000433277.5",
"protein_id": "ENSP00000400316.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1313,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.125C>T",
"hgvs_p": null,
"transcript": "ENST00000481362.5",
"protein_id": null,
"transcript_support_level": 2,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1848,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_rank": 2,
"exon_rank_end": null,
"exon_count": 14,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.228C>T",
"hgvs_p": null,
"transcript": "NR_103869.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1828,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 5,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.39+8320C>T",
"hgvs_p": null,
"transcript": "ENST00000444905.5",
"protein_id": "ENSP00000405557.1",
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": 167,
"cds_start": -4,
"cds_end": null,
"cds_length": 504,
"cdna_start": null,
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"cdna_length": 733,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 3,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.138+8320C>T",
"hgvs_p": null,
"transcript": "ENST00000463915.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 439,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 8,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.138+8320C>T",
"hgvs_p": null,
"transcript": "ENST00000477658.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1064,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 7,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.138+8320C>T",
"hgvs_p": null,
"transcript": "ENST00000491648.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1024,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
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"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 4,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.138+8320C>T",
"hgvs_p": null,
"transcript": "ENST00000495115.5",
"protein_id": null,
"transcript_support_level": 5,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 666,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": false,
"strand": true,
"consequences": [
"intron_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 10,
"intron_rank": 1,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "n.175-2614C>T",
"hgvs_p": null,
"transcript": "NR_103868.2",
"protein_id": null,
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": null,
"cds_start": -4,
"cds_end": null,
"cds_length": null,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1401,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
},
{
"aa_ref": null,
"aa_alt": null,
"canonical": false,
"protein_coding": true,
"strand": true,
"consequences": [
"upstream_gene_variant"
],
"exon_rank": null,
"exon_rank_end": null,
"exon_count": 11,
"intron_rank": null,
"intron_rank_end": null,
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"hgvs_c": "c.-106C>T",
"hgvs_p": null,
"transcript": "XM_047420745.1",
"protein_id": "XP_047276701.1",
"transcript_support_level": null,
"aa_start": null,
"aa_end": null,
"aa_length": 394,
"cds_start": -4,
"cds_end": null,
"cds_length": 1185,
"cdna_start": null,
"cdna_end": null,
"cdna_length": 1378,
"mane_select": null,
"mane_plus": null,
"biotype": null,
"feature": null
}
],
"gene_symbol": "CYP3A43",
"gene_hgnc_id": 17450,
"dbsnp": "rs1043237537",
"frequency_reference_population": 0.0000043565337,
"hom_count_reference_population": 0,
"allele_count_reference_population": 7,
"gnomad_exomes_af": 0.00000274992,
"gnomad_genomes_af": 0.0000197117,
"gnomad_exomes_ac": 4,
"gnomad_genomes_ac": 3,
"gnomad_exomes_homalt": 0,
"gnomad_genomes_homalt": 0,
"gnomad_mito_homoplasmic": null,
"gnomad_mito_heteroplasmic": null,
"computational_score_selected": 0.13939917087554932,
"computational_prediction_selected": "Benign",
"computational_source_selected": "MetaRNN",
"splice_score_selected": 0.019999999552965164,
"splice_prediction_selected": "Benign",
"splice_source_selected": "max_spliceai",
"revel_score": 0.042,
"revel_prediction": "Benign",
"alphamissense_score": 0.1563,
"alphamissense_prediction": null,
"bayesdelnoaf_score": -0.69,
"bayesdelnoaf_prediction": "Benign",
"phylop100way_score": -1.113,
"phylop100way_prediction": "Benign",
"spliceai_max_score": 0.02,
"spliceai_max_prediction": "Benign",
"dbscsnv_ada_score": null,
"dbscsnv_ada_prediction": null,
"apogee2_score": null,
"apogee2_prediction": null,
"mitotip_score": null,
"mitotip_prediction": null,
"acmg_score": 0,
"acmg_classification": "Uncertain_significance",
"acmg_criteria": "PM2,BP4_Moderate",
"acmg_by_gene": [
{
"score": 0,
"benign_score": 2,
"pathogenic_score": 2,
"criteria": [
"PM2",
"BP4_Moderate"
],
"verdict": "Uncertain_significance",
"transcript": "NM_057095.3",
"gene_symbol": "CYP3A43",
"hgnc_id": 17450,
"effects": [
"missense_variant"
],
"inheritance_mode": "AR",
"hgvs_c": "c.125C>T",
"hgvs_p": "p.Thr42Ile"
}
],
"clinvar_disease": "not specified",
"clinvar_classification": "Uncertain significance",
"clinvar_review_status": "criteria provided, single submitter",
"clinvar_submissions_summary": "US:1",
"phenotype_combined": "not specified",
"pathogenicity_classification_combined": "Uncertain significance",
"custom_annotations": null
}
],
"message": null
}