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GeneBe API Showcase
This page demonstrates how to use the GeneBe API to query variant information. The API provides programmatic access to genomic annotations and variant data.
API presented here should be used for checking single variants. If you want to check many variants at once, please use other API endpoints that you will find in the documentation.
Documentation & Advanced Usage
• Complete API documentation:docs.genebe.net/docs/api/overview/
• Interactive endpoint tester:api.genebe.net/cloud/gb-api-doc/swagger-ui/
• Python client for pandas:pypi.org/project/genebe/
• Java CLI for VCF files:github.com/pstawinski/genebe-cli
• All tools documented at:docs.genebe.net
API Request Examples for Variant: 8-103300204-A-G (hg38)
Bash / cURL Example
bash
curl "https://api.genebe.net/cloud/api-public/v1/variant?chr=8&pos=103300204&ref=A&alt=G&genome=hg38&allGenes=true"API Response
json
{
"message": null,
"variants": [
{
"acmg_by_gene": [
{
"benign_score": 16,
"criteria": [
"PVS1_Supporting",
"BP6_Very_Strong",
"BA1"
],
"effects": [
"start_lost"
],
"gene_symbol": "FZD6",
"hgnc_id": 4044,
"hgvs_c": "c.1A>G",
"hgvs_p": "p.Met1?",
"inheritance_mode": "AR",
"pathogenic_score": 1,
"score": -15,
"transcript": "NM_001164616.2",
"verdict": "Benign"
},
{
"benign_score": 20,
"criteria": [
"BP4_Strong",
"BP6_Very_Strong",
"BA1"
],
"effects": [
"intron_variant"
],
"gene_symbol": "BAALC-AS1",
"hgnc_id": 50461,
"hgvs_c": "n.130-14307T>C",
"hgvs_p": null,
"inheritance_mode": "",
"pathogenic_score": 0,
"score": -20,
"transcript": "ENST00000734532.1",
"verdict": "Benign"
}
],
"acmg_classification": "Benign",
"acmg_criteria": "PVS1_Supporting,BP6_Very_Strong,BA1",
"acmg_score": -15,
"allele_count_reference_population": 391586,
"alphamissense_prediction": null,
"alphamissense_score": 0.0783,
"alt": "G",
"apogee2_prediction": null,
"apogee2_score": null,
"bayesdelnoaf_prediction": "Benign",
"bayesdelnoaf_score": -0.49,
"chr": "8",
"clinvar_classification": "Benign",
"clinvar_disease": "Nonsyndromic congenital nail disorder 1,not provided",
"clinvar_review_status": "criteria provided, multiple submitters, no conflicts",
"clinvar_submissions_summary": "B:2",
"computational_prediction_selected": "Benign",
"computational_score_selected": 0.004703730344772339,
"computational_source_selected": "MetaRNN",
"consequences": [
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3728,
"cdna_start": 347,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_003506.4",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "ENST00000358755.5",
"protein_coding": true,
"protein_id": "NP_003497.2",
"strand": true,
"transcript": "NM_003506.4",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": true,
"cdna_end": null,
"cdna_length": 3728,
"cdna_start": 347,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000358755.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": "NM_003506.4",
"protein_coding": true,
"protein_id": "ENSP00000351605.4",
"strand": true,
"transcript": "ENST00000358755.5",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3719,
"cdna_start": 387,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000522566.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000429055.1",
"strand": true,
"transcript": "ENST00000522566.5",
"transcript_support_level": 1
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 3646,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000522484.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "n.97A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000428301.1",
"strand": true,
"transcript": "ENST00000522484.5",
"transcript_support_level": 1
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 674,
"aa_ref": "M",
"aa_start": 1,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3613,
"cdna_start": 232,
"cds_end": null,
"cds_length": 2025,
"cds_start": 1,
"consequences": [
"start_lost"
],
"exon_count": 8,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "NM_001164616.2",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.1A>G",
"hgvs_p": "p.Met1?",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001158088.1",
"strand": true,
"transcript": "NM_001164616.2",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 674,
"aa_ref": "M",
"aa_start": 1,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2774,
"cdna_start": 265,
"cds_end": null,
"cds_length": 2025,
"cds_start": 1,
"consequences": [
"start_lost"
],
"exon_count": 8,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000523739.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.1A>G",
"hgvs_p": "p.Met1?",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000429528.1",
"strand": true,
"transcript": "ENST00000523739.5",
"transcript_support_level": 2
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 718,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3783,
"cdna_start": 369,
"cds_end": null,
"cds_length": 2157,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 8,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000861009.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000531068.1",
"strand": true,
"transcript": "ENST00000861009.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3707,
"cdna_start": 326,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001164615.2",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001158087.1",
"strand": true,
"transcript": "NM_001164615.2",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 4204,
"cdna_start": 829,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 6,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000861012.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000531071.1",
"strand": true,
"transcript": "ENST00000861012.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 706,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3697,
"cdna_start": 372,
"cds_end": null,
"cds_length": 2121,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000955107.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000625166.1",
"strand": true,
"transcript": "ENST00000955107.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 704,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 3738,
"cdna_start": 369,
"cds_end": null,
"cds_length": 2115,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 7,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000861010.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000531069.1",
"strand": true,
"transcript": "ENST00000861010.1",
"transcript_support_level": null
},
{
"aa_alt": "V",
"aa_end": null,
"aa_length": 317,
"aa_ref": "M",
"aa_start": 33,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2541,
"cdna_start": 376,
"cds_end": null,
"cds_length": 954,
"cds_start": 97,
"consequences": [
"missense_variant"
],
"exon_count": 5,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000861011.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.97A>G",
"hgvs_p": "p.Met33Val",
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "ENSP00000531070.1",
"strand": true,
"transcript": "ENST00000861011.1",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": 401,
"aa_ref": null,
"aa_start": null,
"biotype": "protein_coding",
"canonical": false,
"cdna_end": null,
"cdna_length": 2958,
"cdna_start": null,
"cds_end": null,
"cds_length": 1206,
"cds_start": null,
"consequences": [
"5_prime_UTR_variant"
],
"exon_count": 6,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NM_001317796.2",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "c.-49A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": true,
"protein_id": "NP_001304725.1",
"strand": true,
"transcript": "NM_001317796.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2006,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "ENST00000519011.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "n.97A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000427733.1",
"strand": true,
"transcript": "ENST00000519011.5",
"transcript_support_level": 2
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 2682,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 7,
"exon_rank": 1,
"exon_rank_end": null,
"feature": "ENST00000521195.1",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "n.97A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000428188.1",
"strand": true,
"transcript": "ENST00000521195.1",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "nonsense_mediated_decay",
"canonical": false,
"cdna_end": null,
"cdna_length": 1472,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 7,
"exon_rank": 3,
"exon_rank_end": null,
"feature": "ENST00000523933.5",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "n.1A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": "ENSP00000428257.1",
"strand": true,
"transcript": "ENST00000523933.5",
"transcript_support_level": 5
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 3646,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"non_coding_transcript_exon_variant"
],
"exon_count": 6,
"exon_rank": 2,
"exon_rank_end": null,
"feature": "NR_133921.2",
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"hgvs_c": "n.414A>G",
"hgvs_p": null,
"intron_rank": null,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": true,
"transcript": "NR_133921.2",
"transcript_support_level": null
},
{
"aa_alt": null,
"aa_end": null,
"aa_length": null,
"aa_ref": null,
"aa_start": null,
"biotype": "pseudogene",
"canonical": false,
"cdna_end": null,
"cdna_length": 423,
"cdna_start": null,
"cds_end": null,
"cds_length": null,
"cds_start": null,
"consequences": [
"intron_variant"
],
"exon_count": 3,
"exon_rank": null,
"exon_rank_end": null,
"feature": "ENST00000734532.1",
"gene_hgnc_id": 50461,
"gene_symbol": "BAALC-AS1",
"hgvs_c": "n.130-14307T>C",
"hgvs_p": null,
"intron_rank": 1,
"intron_rank_end": null,
"mane_plus": null,
"mane_select": null,
"protein_coding": false,
"protein_id": null,
"strand": false,
"transcript": "ENST00000734532.1",
"transcript_support_level": null
}
],
"custom_annotations": null,
"dbscsnv_ada_prediction": null,
"dbscsnv_ada_score": null,
"dbsnp": "rs827528",
"effect": "start_lost",
"frequency_reference_population": 0.24376497,
"gene_hgnc_id": 4044,
"gene_symbol": "FZD6",
"gnomad_exomes_ac": 356430,
"gnomad_exomes_af": 0.245082,
"gnomad_exomes_homalt": 45822,
"gnomad_genomes_ac": 35156,
"gnomad_genomes_af": 0.231168,
"gnomad_genomes_homalt": 4285,
"gnomad_mito_heteroplasmic": null,
"gnomad_mito_homoplasmic": null,
"hom_count_reference_population": 50107,
"mitotip_prediction": null,
"mitotip_score": null,
"pathogenicity_classification_combined": "Benign",
"phenotype_combined": "Nonsyndromic congenital nail disorder 1|not provided",
"phylop100way_prediction": "Benign",
"phylop100way_score": 0.029,
"pos": 103300204,
"ref": "A",
"revel_prediction": "Benign",
"revel_score": 0.107,
"splice_prediction_selected": "Benign",
"splice_score_selected": 0.03999999910593033,
"splice_source_selected": "max_spliceai",
"spliceai_max_prediction": "Benign",
"spliceai_max_score": 0.04,
"transcript": "NM_001164616.2"
}
]
}